List of works - Joshua Starmer

A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms

scientific article published in May 2008

A new model for random X chromosome inactivation

scientific article

A survey of imprinted gene expression in mouse trophoblast stem cells

scientific article published on 23 February 2015

ANCA autoantigen gene expression highlights neutrophil heterogeneity where expression in normal-density neutrophils correlates with ANCA-induced activation

scientific article published on 21 May 2020

AWclust: point-and-click software for non-parametric population structure analysis

scientific article

Avoiding the high Bonferroni penalty in genome-wide association studies

scientific article

Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling

scientific article

Combination central tolerance and peripheral checkpoint blockade unleashes antimelanoma immunity.

scientific article published on 21 September 2017

Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains

scientific article

EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis

scientific article published on 27 February 2017

EZH2 variants differentially regulate polycomb repressive complex 2 in histone methylation and cell differentiation

scientific article published on 06 December 2018

Evidence for local regulatory control of escape from imprinted X chromosome inactivation.

scientific article

Evidence of Xist RNA-independent initiation of mouse imprinted X-chromosome inactivation

scientific article

Fastq2vcf: a concise and transparent pipeline for whole-exome sequencing data analyses

scientific article

Gene-Specific DNA Methylation Changes Predict Remission in Patients with ANCA-Associated Vasculitis.

scientific article published on 7 November 2016

Histone H3.3 maintains genome integrity during mammalian development

scientific article

Human population structure detection via multilocus genotype clustering

scientific article

IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model

Interactome determination of a Long Noncoding RNA implicated in Embryonic Stem Cell Self-Renewal

scientific article published in Scientific Reports

KDM6 demethylase independent loss of histone H3 lysine 27 trimethylation during early embryonic development

scientific article

Long Noncoding RNA Moderates MicroRNA Activity to Maintain Self-Renewal in Embryonic Stem Cells.

scientific article published on 31 May 2017

Mitochondrial hydrogen peroxide and defective cholesterol efflux prevent in vitro fertilization by cryopreserved inbred mouse sperm

scientific article

Nucleolar association and transcriptional inhibition through 5S rDNA in mammals

scientific article

Obesity Expands a Distinct Population of T Cells in Adipose Tissue and Increases Vulnerability to Infection

scientific article published on 01 April 2019

Repression of the soma-specific transcriptome by Polycomb-repressive complex 2 promotes male germ cell development

scientific article

Schwann cell-derived periostin promotes autoimmune peripheral polyneuropathy via macrophage recruitment

Sequence analysis of rice rubi3 promoter gene expression cassettes for improved transgene expression

article

Sex bias in CNS autoimmune disease mediated by androgen control of autoimmune regulator

scientific article

Site-specific silencing of regulatory elements as a mechanism of X inactivation

scientific article

Sox4 Promotes Atoh1-Independent Intestinal Secretory Differentiation Toward Tuft and Enteroendocrine Fates

scientific article published on 25 July 2018

T Follicular Helper Cell-Dependent Clearance of a Persistent Virus Infection Requires T Cell Expression of the Histone Demethylase UTX.

scientific article published on 28 September 2015

Topoisomerases facilitate transcription of long genes linked to autism

scientific article published on 28 August 2013

Transcription precedes loss of Xist coating and depletion of H3K27me3 during X-chromosome reprogramming in the mouse inner cell mass

scientific article

UTX-guided neural crest function underlies craniofacial features of Kabuki syndrome.

scientific article

fourSig: a method for determining chromosomal interactions in 4C-Seq data

scientific article

lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA

scientific article published on 27 June 2019

List of works by Joshua Starmer

A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms

A new model for random X chromosome inactivation

A survey of imprinted gene expression in mouse trophoblast stem cells

ANCA autoantigen gene expression highlights neutrophil heterogeneity where expression in normal-density neutrophils correlates with ANCA-induced activation

AWclust: point-and-click software for non-parametric population structure analysis

Avoiding the high Bonferroni penalty in genome-wide association studies

Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling

Combination central tolerance and peripheral checkpoint blockade unleashes antimelanoma immunity.

Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains

EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis

EZH2 variants differentially regulate polycomb repressive complex 2 in histone methylation and cell differentiation

Evidence for local regulatory control of escape from imprinted X chromosome inactivation.

Evidence of Xist RNA-independent initiation of mouse imprinted X-chromosome inactivation

Fastq2vcf: a concise and transparent pipeline for whole-exome sequencing data analyses

Gene-Specific DNA Methylation Changes Predict Remission in Patients with ANCA-Associated Vasculitis.

Histone H3.3 maintains genome integrity during mammalian development

Human population structure detection via multilocus genotype clustering

IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model

Interactome determination of a Long Noncoding RNA implicated in Embryonic Stem Cell Self-Renewal

KDM6 demethylase independent loss of histone H3 lysine 27 trimethylation during early embryonic development

Long Noncoding RNA Moderates MicroRNA Activity to Maintain Self-Renewal in Embryonic Stem Cells.

Mitochondrial hydrogen peroxide and defective cholesterol efflux prevent in vitro fertilization by cryopreserved inbred mouse sperm

Nucleolar association and transcriptional inhibition through 5S rDNA in mammals

Obesity Expands a Distinct Population of T Cells in Adipose Tissue and Increases Vulnerability to Infection

Repression of the soma-specific transcriptome by Polycomb-repressive complex 2 promotes male germ cell development

Schwann cell-derived periostin promotes autoimmune peripheral polyneuropathy via macrophage recruitment

Sequence analysis of rice rubi3 promoter gene expression cassettes for improved transgene expression

Sex bias in CNS autoimmune disease mediated by androgen control of autoimmune regulator

Site-specific silencing of regulatory elements as a mechanism of X inactivation

Sox4 Promotes Atoh1-Independent Intestinal Secretory Differentiation Toward Tuft and Enteroendocrine Fates

T Follicular Helper Cell-Dependent Clearance of a Persistent Virus Infection Requires T Cell Expression of the Histone Demethylase UTX.

Topoisomerases facilitate transcription of long genes linked to autism

Transcription precedes loss of Xist coating and depletion of H3K27me3 during X-chromosome reprogramming in the mouse inner cell mass

UTX-guided neural crest function underlies craniofacial features of Kabuki syndrome.

fourSig: a method for determining chromosomal interactions in 4C-Seq data

lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA