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List of works by David S Holmes

A 300 kpb Genome Segment, Including a Complete Set of tRNA Genes, is Dispensable for Acidithiobacillus Ferrooxidans

article

A rapid boiling method for the preparation of bacterial plasmids ⬇️

scientific article (publication date: June 1981)

AFAL: a web service for profiling amino acids surrounding ligands in proteins

scientific article published on 2 August 2014

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

scientific article

An artifact in studies of gene regulation using β-galactosidase reporter gene assays ⬇️

scientific article published on October 19, 2011

Anaerobic Sulfur Metabolism Coupled to Dissimilatory Iron Reduction in the Extremophile Acidithiobacillus ferrooxidans ⬇️

scientific article published on January 25, 2013

Analysis of Gene Expression in Response to Copper Stress in Acidithiobacillus ferrooxidans Strain D2, Isolated from a Copper Bioleaching Operation

article

Application of the avidin-biotin method of gene enrichment to the isolation of long double-stranded DNA containing specific gene sequences ⬇️

scientific article published on September 1, 1977

Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus.

scientific article

Aspects of the predicted physiology of Acidithiobacillus ferrooxidans deduced from an analysis of its partial genome sequence

Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans

scientific article published on 13 March 2007

Chromosomal RNA: Its Properties ⬇️

scientific article published on 01 July 1972

Cloning of a Thiobacillus ferrooxidans plasmid in Escherichia coli ⬇️

scientific article published on January 1, 1984

Comparative Genomics Begins to Unravel the Ecophysiology of Bioleaching

Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: Insights into their metabolism and ecophysiology

article published in 2008

Comparative genomics of the oxidative stress response in bioleaching microorganisms

Complete genome sequence of temperate bacteriophage AcaML1 from the extreme acidophile Acidithiobacillus caldus ATCC 51756

scientific article published on November 2012

Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130.

scientific article published on 23 October 2014

Draft Genome Sequence of the Nominated Type Strain of "Ferrovum myxofaciens," an Acidophilic, Iron-Oxidizing Betaproteobacterium

scientific article published on 21 August 2014

Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.

scientific article published on 19 December 2017

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile

scientific article published on 27 February 2016

Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus

scientific article

Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus

scientific article

Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans

scientific article

Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis

scientific article

Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments ⬇️

scientific article published on November 3, 2011

Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans

scientific article

ICE Afe 1, an actively excising genetic element from the biomining bacterium Acidithiobacillus ferrooxidans.

scientific article published on January 2012

Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling

Interspersion of Repetitive and Single-Copy Sequences in Nuclear Ribonucleic Acid of High Molecular Weight ⬇️

scientific article published on April 1, 1974

Iron Homeostasis Strategies in Acidophilic Iron Oxidizers: Comparative Genomic Analyses

Iron homeostasis strategies in acidophilic iron oxidizers: Studies in Acidithiobacillus and Leptospirillum

Large-scale, multi-genome analysis of alternate open reading frames in bacteria and archaea.

scientific article

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms.

scientific article published on 10 August 2010

Microarray and bioinformatic analyses suggest models for carbon metabolism in the autotroph Acidithiobacillus ferrooxidans

Microbial iron management mechanisms in extremely acidic environments: comparative genomics evidence for diversity and versatility

scientific article

Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation.

scientific article

Phenotypic switching of Thiobacillus ferrooxidans ⬇️

scientific article published on September 1, 1988

Positions of sea urchin (Strongylocentrotus purpuratus) histone genes relative to restriction endonuclease sites on the chimeric plasmids pSp2 and pSp17 ⬇️

scientific article published on April 5, 1977

Predicted CO/CO 2 Fixation in Ferroplasma spp. via a Novel Chimaeric Pathway

Preparation, molecular weight, base composition, and secondary structure of giant nuclear ribonucleic acid ⬇️

scientific article published on June 5, 1973

Rapid purification of bacterial plasmids and coliphage M13 RF without CsCl centrifugation ⬇️

scientific article published on 01 December 1982

Regulation of Expression of the PetI Operon Involved in Iron Oxidation in the Biomining Bacterium Acidithiobacillus Ferrooxidans

Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans

scientific article

Sulfur Metabolism in the Extreme Acidophile Acidithiobacillus Caldus ⬇️

scientific article published on February 10, 2011

Temporal Dynamics of Genes Involved in Metabolic Pathways of C and N of L. ferriphilum , in the Industrial Bioleaching Process of Escondida Mine, Chile

scientific article published in October 2013

The Use Of Bioinformatics And Genome Biology To Advance Our Understanding Of Bioleaching Microorganisms

The mesokaryote Gyrodiniumcohnii lacks nucleosomes ⬇️

scientific article published on June 27, 1979

The use of agar for gel electrophoresis of DNA ⬇️

scientific article published on 01 January 1982

TnpPred: A Web Service for the Robust Prediction of Prokaryotic Transposases ⬇️

scientific article published on November 18, 2012

Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant <i>Acidihalobacter</i> Genus

scientific article published on 24 November 2020

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