List of works - Sylvia Richardson

A Bayesian Model of NMR Spectra for the Deconvolution and Quantification of Metabolites in Complex Biological Mixtures

A Bayesian analysis of the impact of air pollution episodes on cardio-respiratory hospital admissions in the Greater London area

scientific article published on 16 June 2010

A Bayesian approach to multipoint mapping in nuclear families ⬇️

scientific article published on January 1, 1997

A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips

scientific article

A Bayesian hierarchical analysis to compare classical and atypical scrapie surveillance data; Wales 2002-2006.

scientific article

A Bayesian model of time activity data to investigate health effect of air pollution in time series studies

article

A Bayesian partition model for case-control studies on highly polymorphic candidate genes.

scientific article published in April 2002

A comparison of Bayesian spatial models for disease mapping

scientific article

A dominant gain-of-function mutation in universal tyrosine kinase SRC causes thrombocytopenia, myelofibrosis, bleeding, and bone pathologies

scientific article

A flexible hierarchical framework for improving inference in area-referenced environmental health studies

scientific article published on 22 June 2020

A gain-of-function variant in DIAPH1 causes dominant macrothrombocytopenia and hearing loss.

scientific article

A hierarchical model for space-time surveillance data on meningococcal disease incidence

scientific article

A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.

scientific article

A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates

scientific article published on 20 July 2006

A semi-parametric approach to estimate risk functions associated with multi-dimensional exposure profiles: application to smoking and lung cancer

scientific article

A three-state Markov model of Plasmodium falciparum parasitemia

scientific article published in September 1993

Accounting for pregnancy dependence in epidemiologic studies of reproductive outcomes.

scientific article published in November 1997

Acute leukaemia in workers exposed to electromagnetic fields

scientific article published on January 1990

Adjusting for selection bias in retrospective, case-control studies

scientific article published on 14 May 2008

Adjustment for Missing Confounders Using External Validation Data and Propensity Scores

Adult leukemia and farm practices: An alternative approach for assessing geographical pesticide exposure

scientific article published on 01 January 1991

Age at menarche and the risk of operative delivery.

scientific article published on 28 September 2017

Age-related changes in murine myometrial transcript profile are mediated by exposure to the female sex hormones.

scientific article published on 21 October 2015

Aircraft noise and cardiovascular disease near Heathrow airport in London: small area study

scientific article published on 8 October 2013

Antioxidants in female breast cancer patients

scientific article published in January 1991

Application of the Lasso to Expression Quantitative Trait Loci Mapping

Association of environmental insecticide exposure and fetal growth with a Bayesian model including multiple exposure sources: the PELAGIE mother-child cohort

scientific article published on 24 April 2012

Association of sirtuin 1 (SIRT1) gene SNPs and transcript expression levels with severe obesity

scientific article published on 14 July 2011

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

scientific article

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

scientific article

BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data

scientific article

Balancing the robustness and predictive performance of biomarkers.

scientific article published on 2 August 2013

BaySTDetect: detecting unusual temporal patterns in small area data via Bayesian model choice.

scientific article

Bayesian Methods for Microarray Data

Bayesian Models for Sparse Regression Analysis of High Dimensional Data*

Bayesian analysis of the multivariate geographical distribution of the socio-economic environment in England

article

Bayesian detection of expression quantitative trait loci hot spots

scientific article published on 16 September 2011

Bayesian graphical models for regression on multiple data sets with different variables

scientific article

Bayesian hierarchical model for identifying changes in gene expression from microarray experiments.

scientific article published on January 2002

Bayesian hierarchical models in ecological studies of health-environment effects

article

Bayesian modeling of differential gene expression

scientific article published on March 2006

Bayesian non-parametric models for spatially indexed data of mixed type

Bayesian profile regression with an application to the National Survey of Children's Health

scientific article published on 29 March 2010

Bayesian regression discontinuity designs: incorporating clinical knowledge in the causal analysis of primary care data ⬇️

scientific article

Bayesian shared spatial-component models to combine and borrow strength across sparse disease surveillance sources

scientific article

Bayesian spatio-temporal analysis of joint patterns of male and female lung cancer risks in Yorkshire (UK).

scientific article published in August 2006

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

scientific article

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

article

Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)-like diet compared with a typical American Diet

scientific article

Breast cancer risk, nightwork, and circadian clock gene polymorphisms

scientific article published on 11 June 2014

Cancer risks in populations living near landfill sites in Great Britain

scientific article published on June 2002

Childhood leukemia incidence in the vicinity of La Hague nuclear-waste reprocessing facility (France).

scientific article published in July 1993

Classification loss function for parameter ensembles in Bayesian hierarchical models

Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods

scientific article published on 23 February 2008

Comparison of relative risks obtained in ecological and individual studies: some methodological considerations

scientific article

Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data

scientific article published on 29 August 2018

Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data

scientific article published on 01 October 2019

Data Mining Cancer Registries: Retrospective Surveillance of Small Area Time Trends in Cancer Incidence Using BaySTDetect

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.

scientific article published on 2 February 2006

Differential coexpression analysis of obesity-associated networks in human subcutaneous adipose tissue.

scientific article

Discussant: Sylvia Richardson

Discussion on the meeting on 'Statistical modelling and analysis of genetic data'

article

Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping

scientific article

Dissection of a complex disease susceptibility region using a Bayesian stochastic search approach to fine mapping

Down syndrome in births near landfill sites

scientific article published in December 2007

Drug sensitivity prediction with normal inverse Gaussian shrinkage informed by external data

scientific article published on 23 July 2020

Dynamics of the risk of smoking-induced lung cancer: a compartmental hidden Markov model for longitudinal analysis

scientific article

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration

scientific article published on 13 January 2011

Ecological analysis of digestive cancer mortality related to contamination by diarrhetic shellfish poisoning toxins along the coasts of France.

scientific article published in October 2000

Ecological bias and confounding

scientific article

Ecological bias and linear dose response relationship

article

Evaluating the No Cold Calling Zones in Peterborough, England: Application of a Novel Statistical Method for Evaluating Neighbourhood Policing Policies

article

Evolutionary stochastic search for Bayesian model exploration

article

Examining the joint effect of multiple risk factors using exposure risk profiles: lung cancer in nonsmokers

scientific article

Exploiting General Independence Criteria For Network Inference

Exploring data from genetic association studies using Bayesian variable selection and the Dirichlet process: application to searching for gene × gene patterns.

scientific article

Exploring dependence between categorical variables: Benefits and limitations of using variable selection within Bayesian clustering in relation to log-linear modelling with interaction terms

scientific article published on June 2016

False discovery rate estimation for stability selection: application to genome-wide association studies

scientific article

Fast Bayesian inference in large Gaussian graphical models

scientific article published on 06 May 2019

Finding exclusively deleted or amplified genomic areas in lung adenocarcinomas using a novel chromosomal pattern analysis

scientific article

Flexible dose-response models for Japanese atomic bomb survivor data: Bayesian estimation and prediction of cancer risk.

scientific article published on 25 November 2004

Fully Bayesian mixture model for differential gene expression: simulations and model checks.

scientific article published on 21 December 2007

GUESS-ing polygenic associations with multiple phenotypes using a GPU-based evolutionary stochastic search algorithm

scientific article

Geographic density of landfill sites and risk of congenital anomalies in England.

scientific article published on 5 December 2008

Glycomics investigation into insulin action

scientific article published on 10 January 2006

HDL-Cholesterol and Breast Cancer: A Joint Study in Northern Italy and Southern France

article

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.

scientific article

Hidden Markov Models and Disease Mapping

article published in 2002

Hierarchical priors for bias parameters in Bayesian sensitivity analysis for unmeasured confounding

scientific article published in February 2012

Hierarchical related regression for combining aggregate and individual data in studies of socio-economic disease risk factors

High-dimensional regression in practice: an empirical study of finite-sample prediction, variable selection and ranking

scientific article published on 19 December 2019

Human phenotype ontology annotation and cluster analysis to unravel genetic defects in 707 cases with unexplained bleeding and platelet disorders

scientific article published on 9 April 2015

Identifying cell types from spatially referenced single-cell expression datasets

scientific article

Identifying vulnerable populations through an examination of the association between multipollutant profiles and poverty

scientific article published on 19 August 2011

Impact of Cliff and Ord (1969, 1981) on Spatial Epidemiology

scholarly article by Sylvia Richardson & Chantal Guihenneuc-Jouyaux published October 2009 in Geographical Analysis

Improving ecological inference using individual-level data

scientific article

Imputation of ordinal outcomes: a comparison of approaches in traumatic brain injury

scientific article published on 27 October 2020

Inference from ecological models: estimating the relative risk of stroke from air pollution exposure using small area data

scientific article

Influence des syndromes grippaux sur l'incidence des infections à méningocoque

Insight into Genotype-Phenotype Associations through eQTL Mapping in Multiple Cell Types in Health and Immune-Mediated Disease

scientific article

Interpreting posterior relative risk estimates in disease-mapping studies

scientific article

JAM: A Scalable Bayesian Framework for Joint Analysis of Marginal SNP Effects

scientific article

Lymphoma, multiple myeloma and leukaemia among French farmers in relation to pesticide exposure

article

MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays

scientific article

MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.

scientific article

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues

scientific article

Medical event profiling of COPD patients

scientific article published in August 2004

Meningococcal disease and influenza-like syndrome: a new approach to an old question.

scientific article published on September 1992

Methodological problems in health-environment ecological studies

scientific article published in July 2000

Mixture models in measurement error problems, with reference to epidemiological studies

scientific article published in October 2002

Model criticism based on likelihood-free inference, with an application to protein network evolution

scholarly article

Modelling of an Epidemiological Time Series by a Threshold Autoregressive Model

scholarly article by Laurence Watier & Sylvia Richardson published 1995 in Journal of the Royal Statistical Society Series D: The Statistician

Modelling the annual risk of tuberculosis infection

scientific article

Multidimensional analysis of the effect of occupational exposure to organic solvents on lung cancer risk: the ICARE study

scientific article published on 23 February 2016

New insights into the genetic control of gene expression using a Bayesian multi-tissue approach

scientific article

Occupational risk factors for acute leukaemia: a case-control study

scientific article published on December 1992

Online appendix for: "Evaluating the No Cold Calling zones in Peterborough, England: application of a novel statistical method for evaluating neighbourhood policing policies"

article

PReMiuM: An R Package for Profile Regression Mixture Models Using Dirichlet Processes

scientific article published on March 2015

Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases

scientific article published on 24 February 2016

Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis.

scientific article

Principles of Experimental Design for Big Data Analysis

scientific article published on August 2017

Progressive pulmonary sarcoidosis is associated with over-expression of TYK2 and p21Waf1/Cip1.

scientific article published in June 2006

Projection of cancer risks from the Japanese atomic bomb survivors to the England and Wales population taking into account uncertainty in risk parameters

scientific article published in December 2000

R2GUESS: A Graphics Processing Unit-Based R Package for Bayesian Variable Selection Regression of Multivariate Responses.

scientific article published in January 2016

Re: Consumption of Olive Oil and Specific Food groups in Relation to Breast Cancer Risk in Greece

Replicable and Coupled Changes in Innate and Adaptive Immune Gene Expression in Two Case-Control Studies of Blood Microarrays in Major Depressive Disorder

scientific article

Reply to Robert et al.: Model criticism informs model choice and model comparison

article published in the Proceedings of the National Academy of Sciences of the United States of America

Risk of cancer in the vicinity of municipal solid waste incinerators: importance of using a flexible modelling strategy.

scientific article published on 28 May 2009

Sampling from Dirichlet process mixture models with unknown concentration parameter: mixing issues in large data implementations

scientific article

Short-term effects of sulphur dioxide pollution on mortality in two French cities

scientific article published in March 1989

Simplified Bayesian sensitivity analysis for mismeasured and unobserved confounders

scientific article published in December 2010

Space–time variability in burglary risk: A Bayesian spatio-temporal modelling approach

Spatio-temporal patterns of bladder cancer incidence in Utah (1973-2004) and their association with the presence of toxic release inventory sites

scientific article

Special Issue: Modern Statistical Methods for Disease Gene Mapping

article

Statistical Methods in Integrative Genomics

scientific article

Statistical methods for geographical correlation studies

Statistical tools for synthesizing lists of differentially expressed features in related experiments

scientific article published on January 2007

Studying place effects on health by synthesising individual and area-level outcomes

scientific article published on 22 October 2008

Tail posterior probability for inference in pairwise and multiclass gene expression data.

scientific article

The Authers Reply

The RNA landscape of the human placenta in health and disease

scientific article published on 11 May 2021

Three plasma biomarkers of HTLV-1-associated myelopathy/tropical spastic paraparesis.

scientific article

Transcriptional diversity during lineage commitment of human blood progenitors

scientific article

Two-pronged Strategy for Using DIC to Compare Selection Models with Non-Ignorable Missing Responses

article

Uncovering selection bias in case-control studies using Bayesian post-stratification

scientific article published on 10 January 2013

Use of space-time models to investigate the stability of patterns of disease

scientific article published on August 2008

Using Bayesian graphical models to model biases in observational studies and to combine multiple sources of data: application to low birth weight and water disinfection by-products

article

Using ecological propensity score to adjust for missing confounders in small area studies.

scientific article

Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum

scientific article

Using statistical models to identify factors that have a role in defining the abundance of ions produced by tandem MS.

scientific article published on 20 June 2007

Variable selection and Bayesian model averaging in case-control studies

scientific article published on 01 November 2001

Vitesse de convergence du th�or�me de la limite centrale pour des champs faiblement d�pendants

WWOX tumour suppressor gene polymorphisms and ovarian cancer pathology and prognosis.

scientific article published on 13 January 2010

sdef: an R package to synthesize lists of significant features in related experiments

scientific article

List of works by Sylvia Richardson

A Bayesian Model of NMR Spectra for the Deconvolution and Quantification of Metabolites in Complex Biological Mixtures

A Bayesian analysis of the impact of air pollution episodes on cardio-respiratory hospital admissions in the Greater London area

A Bayesian approach to multipoint mapping in nuclear families ⬇️

A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips

A Bayesian hierarchical analysis to compare classical and atypical scrapie surveillance data; Wales 2002-2006.

A Bayesian model of time activity data to investigate health effect of air pollution in time series studies

A Bayesian partition model for case-control studies on highly polymorphic candidate genes.

A comparison of Bayesian spatial models for disease mapping

A dominant gain-of-function mutation in universal tyrosine kinase SRC causes thrombocytopenia, myelofibrosis, bleeding, and bone pathologies

A flexible hierarchical framework for improving inference in area-referenced environmental health studies

A gain-of-function variant in DIAPH1 causes dominant macrothrombocytopenia and hearing loss.

A hierarchical model for space-time surveillance data on meningococcal disease incidence

A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.

A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates

A semi-parametric approach to estimate risk functions associated with multi-dimensional exposure profiles: application to smoking and lung cancer

A three-state Markov model of Plasmodium falciparum parasitemia

Accounting for pregnancy dependence in epidemiologic studies of reproductive outcomes.

Acute leukaemia in workers exposed to electromagnetic fields

Adjusting for selection bias in retrospective, case-control studies

Adjustment for Missing Confounders Using External Validation Data and Propensity Scores

Adult leukemia and farm practices: An alternative approach for assessing geographical pesticide exposure

Age at menarche and the risk of operative delivery.

Age-related changes in murine myometrial transcript profile are mediated by exposure to the female sex hormones.

Aircraft noise and cardiovascular disease near Heathrow airport in London: small area study

Antioxidants in female breast cancer patients

Application of the Lasso to Expression Quantitative Trait Loci Mapping

Association of environmental insecticide exposure and fetal growth with a Bayesian model including multiple exposure sources: the PELAGIE mother-child cohort

Association of sirtuin 1 (SIRT1) gene SNPs and transcript expression levels with severe obesity

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data

Balancing the robustness and predictive performance of biomarkers.

BaySTDetect: detecting unusual temporal patterns in small area data via Bayesian model choice.

Bayesian Methods for Microarray Data

Bayesian Models for Sparse Regression Analysis of High Dimensional Data*

Bayesian analysis of the multivariate geographical distribution of the socio-economic environment in England

Bayesian detection of expression quantitative trait loci hot spots

Bayesian graphical models for regression on multiple data sets with different variables

Bayesian hierarchical model for identifying changes in gene expression from microarray experiments.

Bayesian hierarchical models in ecological studies of health-environment effects

Bayesian modeling of differential gene expression

Bayesian non-parametric models for spatially indexed data of mixed type

Bayesian profile regression with an application to the National Survey of Children's Health

Bayesian regression discontinuity designs: incorporating clinical knowledge in the causal analysis of primary care data ⬇️

Bayesian shared spatial-component models to combine and borrow strength across sparse disease surveillance sources

Bayesian spatio-temporal analysis of joint patterns of male and female lung cancer risks in Yorkshire (UK).

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)-like diet compared with a typical American Diet

Breast cancer risk, nightwork, and circadian clock gene polymorphisms

Cancer risks in populations living near landfill sites in Great Britain

Childhood leukemia incidence in the vicinity of La Hague nuclear-waste reprocessing facility (France).

Classification loss function for parameter ensembles in Bayesian hierarchical models

Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods

Comparison of relative risks obtained in ecological and individual studies: some methodological considerations

Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data

Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data

Data Mining Cancer Registries: Retrospective Surveillance of Small Area Time Trends in Cancer Incidence Using BaySTDetect

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.

Differential coexpression analysis of obesity-associated networks in human subcutaneous adipose tissue.

Discussant: Sylvia Richardson

Discussion on the meeting on 'Statistical modelling and analysis of genetic data'

Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping

Dissection of a complex disease susceptibility region using a Bayesian stochastic search approach to fine mapping

Down syndrome in births near landfill sites

Drug sensitivity prediction with normal inverse Gaussian shrinkage informed by external data

Dynamics of the risk of smoking-induced lung cancer: a compartmental hidden Markov model for longitudinal analysis

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration

Ecological analysis of digestive cancer mortality related to contamination by diarrhetic shellfish poisoning toxins along the coasts of France.

Ecological bias and confounding

Ecological bias and linear dose response relationship

Evaluating the No Cold Calling Zones in Peterborough, England: Application of a Novel Statistical Method for Evaluating Neighbourhood Policing Policies

Evolutionary stochastic search for Bayesian model exploration

Examining the joint effect of multiple risk factors using exposure risk profiles: lung cancer in nonsmokers

Exploiting General Independence Criteria For Network Inference

Exploring data from genetic association studies using Bayesian variable selection and the Dirichlet process: application to searching for gene × gene patterns.

Exploring dependence between categorical variables: Benefits and limitations of using variable selection within Bayesian clustering in relation to log-linear modelling with interaction terms

False discovery rate estimation for stability selection: application to genome-wide association studies

Fast Bayesian inference in large Gaussian graphical models