List of works - Arzucan Özgür

A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction

scientific article published on 18 March 2016

A novel methodology on distributed representations of proteins using their interacting ligands.

scientific article published in July 2018

A review on computational systems biology of pathogen-host interactions

scientific article

Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study

scientific article published on 21 September 2016

Automatic query generation using word embeddings for retrieving passages describing experimental methods

scientific article published on 10 January 2017

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain

scientific article published in July 2017

Bayesian pathway analysis of cancer microarray data

scientific article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

scientific article published in September 2016

ChemBoost: A chemical language based approach for protein - ligand binding affinity prediction

scientific article published on 22 November 2020

Classification of Beta-lactamases and penicillin binding proteins using ligand-centric network models

scientific article published on 17 February 2015

DeepDTA: deep drug-target binding affinity prediction

scholarly article by Hakime Öztürk published in September 2018

Detection and categorization of bacteria habitats using shallow linguistic analysis

scientific article published on 13 July 2015

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

scientific article

Exploring chemical space using natural language processing methodologies for drug discovery

scientific article published on 03 February 2020

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations

scientific article

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

scientific article published on 20 December 2012

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

scientific article published on July 2008

Introducing meta-services for biomedical information extraction

scientific article published on September 2008

Linking entities through an ontology using word embeddings and syntactic re-ranking

scientific article published on 27 March 2019

Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network

scientific article

Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks

scientific article

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels

scientific article published on 23 December 2019

Michigan molecular interactions r2: from interacting proteins to pathways

scientific article

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology ⬇️

scientific article

Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.

scientific article

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.

scientific article published on 14 March 2017

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

PHISTO: pathogen–host interaction search tool ⬇️

scientific article published on March 20, 2013

Segmenting hashtags and analyzing their grammatical structure

scientific article published on 8 December 2017

Statistical representation models for mutation information within genomic data

scientific article published on 13 June 2019

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature

scientific article published on 19 December 2016

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

List of works by Arzucan Özgür

A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction

A novel methodology on distributed representations of proteins using their interacting ligands.

A review on computational systems biology of pathogen-host interactions

Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study

Automatic query generation using word embeddings for retrieving passages describing experimental methods

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain

Bayesian pathway analysis of cancer microarray data

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

ChemBoost: A chemical language based approach for protein - ligand binding affinity prediction

Classification of Beta-lactamases and penicillin binding proteins using ligand-centric network models

DeepDTA: deep drug-target binding affinity prediction

Detection and categorization of bacteria habitats using shallow linguistic analysis

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions

Exploring chemical space using natural language processing methodologies for drug discovery

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

Introducing meta-services for biomedical information extraction

Linking entities through an ontology using word embeddings and syntactic re-ranking

Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network

Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels

Michigan molecular interactions r2: from interacting proteins to pathways

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology ⬇️

Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

PHISTO: pathogen–host interaction search tool ⬇️

Segmenting hashtags and analyzing their grammatical structure

Statistical representation models for mutation information within genomic data

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature

U-Compare bio-event meta-service: compatible BioNLP event extraction services