List of works - Anna Panchenko

Database resources of the National Center for Biotechnology Information

scientific article (published 2012-01-01)

Database resources of the National Center for Biotechnology Information

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2010-01-01)

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

scientific article (publication date: 2007)

Deciphering protein-protein interactions. Part I. Experimental techniques and databases

scientific article

Phosphorylation in protein-protein binding: effect on stability and function.

scientific article

Molecular mechanisms of disease-causing missense mutations

scientific article

The relationship of protein conservation and sequence length

scientific article

Prediction of functional sites by analysis of sequence and structure conservation

scientific article published on 9 March 2004

MMDB: Entrez's 3D-structure database.

scientific article

Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis

scientific article

Modeling effects of human single nucleotide polymorphisms on protein-protein interactions

scientific article

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

scientific article

MMDB: 3D structures and macromolecular interactions

scientific article

Modeling the evolution of protein domain architectures using maximum parsimony

scientific article published on 10 November 2006

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites

scientific article

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

scientific article

Cancer missense mutations alter binding properties of proteins and their interaction networks

scientific article (publication date: 2013)

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

scientific article

Finding biologically relevant protein domain interactions: conserved binding mode analysis

scientific article published on 29 December 2005

Predicting the Impact of Missense Mutations on Protein-Protein Binding Affinity.

scientific article

Coevolution in defining the functional specificity

scientific article

Correlated evolution of interacting proteins: looking behind the mirrortree

scientific article published on 09 October 2008

Evolution of protein binding modes in homooligomers

scientific article

The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen

Physicochemical mechanisms of protein regulation by phosphorylation

scientific article published on August 7, 2014

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

scientific article published on 14 December 2015

Functional specificity lies within the properties and evolutionary changes of amino acids

scientific article

Evolutionary plasticity of protein families: coupling between sequence and structure variation

scientific article published in November 2005

Finding weak similarities between proteins by sequence profile comparison

scientific article

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

scientific article published on 05 May 2016

Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes

scientific article

Structural and functional roles of coevolved sites in proteins

scientific article

Comparison of sequence and structure alignments for protein domains

scientific article

Structural similarity of loops in protein families: toward the understanding of protein evolution

scientific article

HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants

scientific article

Ensemble approach to predict specificity determinants: benchmarking and validation

scientific article

Large‐scale mapping of human protein interactome using structural complexes

scientific article published on March 1, 2012

Exploring functional roles of multibinding protein interfaces

scientific article

Modulating Protein–Protein Interactions with Small Molecules: The Importance of Binding Hotspots

scientific article published on December 16, 2011

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder

scientific article

Threading with explicit models for evolutionary conservation of structure and sequence

scientific article

Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers

scientific article

Functional states of homooligomers: insights from the evolution of glycosyltransferases

scientific article

Analysis of protein homology by assessing the (dis)similarity in protein loop regions

scientific article

Exploring background mutational processes to decipher cancer genetic heterogeneity.

scientific article published on 4 May 2017

Refining multiple sequence alignments with conserved core regions

scientific article published on 17 May 2006

Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases

scientific article published on July 16, 2012

Long-term trends in evolution of indels in protein sequences

scientific article published on 13 February 2007

MMDB: Entrez's 3D-structure database

scientific article

List of works by Anna Panchenko

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

Deciphering protein-protein interactions. Part I. Experimental techniques and databases

Phosphorylation in protein-protein binding: effect on stability and function.

Molecular mechanisms of disease-causing missense mutations

The relationship of protein conservation and sequence length

Prediction of functional sites by analysis of sequence and structure conservation

MMDB: Entrez's 3D-structure database.

Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis

Modeling effects of human single nucleotide polymorphisms on protein-protein interactions

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

MMDB: 3D structures and macromolecular interactions

Modeling the evolution of protein domain architectures using maximum parsimony

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

Cancer missense mutations alter binding properties of proteins and their interaction networks

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

Finding biologically relevant protein domain interactions: conserved binding mode analysis

Predicting the Impact of Missense Mutations on Protein-Protein Binding Affinity.

Coevolution in defining the functional specificity

Correlated evolution of interacting proteins: looking behind the mirrortree

Evolution of protein binding modes in homooligomers

The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen

Physicochemical mechanisms of protein regulation by phosphorylation

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

Functional specificity lies within the properties and evolutionary changes of amino acids

Evolutionary plasticity of protein families: coupling between sequence and structure variation

Finding weak similarities between proteins by sequence profile comparison

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes

Structural and functional roles of coevolved sites in proteins

Comparison of sequence and structure alignments for protein domains

Structural similarity of loops in protein families: toward the understanding of protein evolution

HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants

Ensemble approach to predict specificity determinants: benchmarking and validation

Large‐scale mapping of human protein interactome using structural complexes

Exploring functional roles of multibinding protein interfaces

Modulating Protein–Protein Interactions with Small Molecules: The Importance of Binding Hotspots

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder

Threading with explicit models for evolutionary conservation of structure and sequence

Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers

Functional states of homooligomers: insights from the evolution of glycosyltransferases

Analysis of protein homology by assessing the (dis)similarity in protein loop regions

Exploring background mutational processes to decipher cancer genetic heterogeneity.

Refining multiple sequence alignments with conserved core regions

Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases

Long-term trends in evolution of indels in protein sequences

MMDB: Entrez's 3D-structure database