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List of works by Xin He

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data

scientific article (publication date: December 2009)

Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution

scientific article

ChIPs and regulatory bits

scientific article published in February 2010

Evolution of cis-Regulatory Sequences in Drosophila ⬇️

scientific article published on January 1, 2010

Evolution of regulatory sequences in 12 Drosophila species

scientific article

Evolutionary Origins of Transcription Factor Binding Site Clusters ⬇️

scientific article published on November 10, 2011

Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

scientific article published on January 2007

MORPH: Probabilistic alignment combined with hidden Markov models of cis-regulatory modules

scientific article published on 24 September 2007

MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules

scientific article

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression ⬇️

scientific article published on September 16, 2010

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