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List of works by Simone Scalabrin

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat

scientific article published on 27 October 2011

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

scientific article

A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.

scientific article

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance

scientific article published on 13 June 2008

A physical map of the short arm of wheat chromosome 1A.

scientific article

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm

scientific article published on 13 March 2020

A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach

scientific article

An extensive evaluation of read trimming effects on Illumina NGS data analysis

scientific article

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

Automated FingerPrint Background removal: FPB

scientific article

Correction: Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm.

scientific article published on 21 June 2012

De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

scientific article

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm

scientific article

Draft Genome Sequence of the Probiotic Yeast Kluyveromyces marxianus fragilis B0399

scientific article published on September 2016

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution

scientific article

GAM-NGS: genomic assemblies merger for next generation sequencing

scientific article

Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine

scientific article published on 11 November 2019

Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra†.

scientific article published on 24 May 2017

Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker

scientific article published on 01 January 2019

Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

scientific article published on 10 April 2019

Hierarchical Assembly of Pools

Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties

scientific article

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

scientific article

Mapping and sequencing complex genomes: let's get physical!

scientific article published in August 2004

Mining microsatellites in the peach genome: development of new long-core SSR markers for genetic analyses in five Prunus species

scientific article

Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach

scientific article published on 01 November 2015

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar

scientific article (publication date: 26 March 2010)

Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of 'Lito' Chromosome 1 and Analysis of Candidate Genes

scientific article published on 04 December 2019

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize

scientific article published on 01 October 2019

The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing

scientific article

The functional capacity of plantaricin-producing Lactobacillus plantarum SF9C and S-layer-carrying Lactobacillus brevis SF9B to withstand gastrointestinal transit

scientific article published on 19 May 2020

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

scientific article

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

scientific article

The limits and potential of paleogenomic techniques for reconstructing grapevine domestication

The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome

scientific article

Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach

scientific article

Wnt-mediated down-regulation of Sp1 target genes by a transcriptional repressor Sp5.

scientific article

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