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List of works by Michael A. Unser

3-D shape estimation of DNA molecules from stereo cryo-electron micro-graphs using a projection-steerable snake

scientific article published on January 2006

3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction.

scientific article published on 14 October 2014

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy

scientific article

3D steerable wavelets in practice

scientific article published on 26 June 2012

3‐D PSF fitting for fluorescence microscopy: implementation and localization application ⬇️

scientific article published on November 5, 2012

A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis

scientific article

A Fast Wavelet-Based Reconstruction Method for Magnetic Resonance Imaging ⬇️

scientific article published on April 7, 2011

A Neural-Network-Based Convex Regularizer for Inverse Problems

scientific article published in January 2023

A PSF-based approach to Biplane calibration in 3D super-resolution microscopy

A Statistical Framework to Investigate the Optimality of Signal-Reconstruction Methods

scientific article published in January 2023

A box spline calculus for computed tomography

scholarly article published 2010

A box spline calculus for the discretization of computed tomography reconstruction problems

scientific article

A bulk modulus dependent linear model for acoustical imaging

scientific article published in April 2009

A chemostat array enables the spatio-temporal analysis of the yeast proteome

scientific article

A fast multilevel algorithm for wavelet-regularized image restoration

scientific article published on 2 February 2009

A maximum-likelihood formalism for sub-resolution axial localization of fluorescent nanoparticles

scientific article published on 01 December 2005

A new SURE approach to image denoising: interscale orthonormal wavelet thresholding

scientific article

A note on cubic convolution interpolation

scientific article published on 01 January 2003

A practical inverse-problem approach to digital holographic reconstruction

scientific article published on February 2013

A software solution for recording circadian oscillator features in time-lapse live cell microscopy

scientific article

A time-domain wavelet-based approach for fluorescence diffuse optical tomography

scientific article published on June 2010

Adaptive image resizing based on continuous-domain stochastic modeling

scientific article published in January 2014

An Optimized Spline‐Based Registration of a 3D CT to a Set of C‐Arm Images ⬇️

scientific article published on April 6, 2006

An efficient numerical method for general L(p) regularization in fluorescence molecular tomography

scientific article published on 15 March 2010

Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN.

scientific article published on 12 December 2014

Anisotropic interpolation of sparse generalized image samples

scientific article

Approximate Message Passing with Consistent Parameter Estimation and Applications to Sparse Learning ⬇️

scientific article published in January 2012

Approximation Error for Quasi-Interpolators and (Multi-)Wavelet Expansions

scientific article published in 1999

Autofocus for digital Fresnel holograms by use of a Fresnelet-sparsity criterion

scientific article

Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics.

scientific article published in September 2005

Autonomous and self-sustained circadian oscillators displayed in human islet cells ⬇️

scientific article published on December 15, 2012

B-Spline-Based Exact Discretization of Continuous-Domain Inverse Problems With Generalized TV Regularization

scholarly article

BSLIM: spectral localization by imaging with explicit B0 field inhomogeneity compensation

scientific article published in July 2007

Beyond Wiener’s Lemma: Nuclear Convolution Algebras and the Inversion of Digital Filters

scientific article published in 2019

Bi-exponential edge-preserving smoother.

scientific article published on 22 May 2012

Binary compressed imaging

scientific article published on 10 November 2012

Biomedical Image Reconstruction: From the Foundations to Deep Neural Networks ⬇️

scholarly article

CNN-Based Projected Gradient Descent for Consistent CT Image Reconstruction

scientific article published on 01 June 2018

Circadian gene expression is resilient to large fluctuations in overall transcription rates

scientific article

Compact in-line lensfree digital holographic microscope

scientific article published on 18 November 2017

Compact lensless phase imager.

scientific article published in February 2017

Complete parameterization of piecewise-polynomial interpolation kernels

scientific article published in January 2003

Complex wavelet bases, steerability, and the marr-like pyramid

scientific article published in November 2008

Complex wavelets for extended depth-of-field: a new method for the fusion of multichannel microscopy images

scientific article

Complex-wave retrieval from a single off-axis hologram

scientific article published in March 2004

Compressed sensing for STEM tomography

scientific article published on 6 April 2017

Constrained regularized reconstruction of X-ray-DPCI tomograms with weighted-norm.

scientific article published in December 2013

Continuous localization using sparsity constraints for high-density super-resolution microscopy

Continuous-Domain Solutions of Linear Inverse Problems With Tikhonov Versus Generalized TV Regularization

scholarly article

Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast

scientific article

Convex Generalizations of Total Variation Based on the Structure Tensor with Applications to Inverse Problems

DeconvolutionLab2: An open-source software for deconvolution microscopy

scientific article

Deep Convolutional Neural Network for Inverse Problems in Imaging.

scientific article published on 15 June 2017

Deep Learning Enables Individual Xenograft Cell Classification in Histological Images by Analysis of Contextual Features

scientific article published on 17 May 2021

Deep-learning projector for optical diffraction tomography

scientific article published on 01 February 2020

DeepImageJ: A user-friendly environment to run deep learning models in ImageJ

scientific article

Delaunay-Triangulation-Based Learning With Hessian Total-Variation Regularization

scientific article published in January 2023

Design of Steerable Wavelets to Detect Multifold Junctions

scientific article published on 11 December 2015

Design of steerable filters for feature detection using canny-like criteria.

scientific article published in August 2004

Discretization of the radon transform and of its inverse by spline convolutions

scientific article published in April 2002

DiversePathsJ: Diverse Shortest Paths for Bioimage Analysis

scientific article published on 27 September 2017

Dynamic PET reconstruction using wavelet regularization with adapted basis functions

scientific article published in January 2008

Effect of aging on elastin functionality in human cerebral arteries

scientific article published on 28 May 2009

Efficient Shape Priors for Spline-Based Snakes

scientific article published on November 2015

Efficient energies and algorithms for parametric snakes.

scientific article published in September 2004

Efficient inversion of multiple-scattering model for optical diffraction tomography

scientific article published in September 2017

Elastic image registration of 2-D gels for differential and repeatability studies

scientific article published in January 2008

Elastic registration of biological images using vector-spline regularization

scientific article published in April 2005

Exact and efficient signal reconstruction in frequency-domain optical-coherence tomography

scientific article

Exact complex-wave reconstruction in digital holography

scientific article

FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data.

scientific article

Fast 3D reconstruction method for differential phase contrast X-ray CT.

scientific article published in June 2016

Fast O1 bilateral filtering using trigonometric range kernels

scientific article

Fast Piecewise-Affine Motion Estimation Without Segmentation

scientific article published on 23 July 2018

Fast Segmentation From Blurred Data in 3D Fluorescence Microscopy.

scientific article

Fast interscale wavelet denoising of Poisson-corrupted images

scientific article published in 2010

Fast iterative reconstruction of differential phase contrast X-ray tomograms

scientific article published in March 2013

Fast live cell imaging at nanometer scale using annihilating filter-based low-rank Hankel matrix approach

scholarly article published 11 September 2015

Fast multiscale reconstruction for Cryo-EM

scientific article published on 24 September 2018

Fast parametric elastic image registration

scientific article published in January 2003

Fast space-variant elliptical filtering using box splines

scientific article

First IEEE symposium on biomedical imaging

scientific article published on 01 August 2002

FlyLimbTracker: An active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila.

scientific article

Four-dimensional wavelet compression of arbitrarily sized echocardiographic data

scientific article

Fresnelets: new multiresolution wavelet bases for digital holography

scientific article

From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee

scientific article published in June 2023

Full motion and flow field recovery from echo Doppler data

scientific article

Gaussian and sparse processes are limits of generalized Poisson processes

scholarly article

Grid-Free Localization Algorithm Using Low-rank Hankel Matrix for Super-Resolution Microscopy

scientific article published on 06 June 2018

Hermite Snakes with Control of Tangents.

scientific article published on 6 April 2016

Hessian Schatten-norm regularization for linear inverse problems.

scientific article published on 4 January 2013

Hessian-based norm regularization for image restoration with biomedical applications

scientific article

Hex-splines: a novel spline family for hexagonal lattices

scientific article

High-Quality Parallel-Ray X-Ray CT Back Projection Using Optimized Interpolation.

scientific article published on 23 May 2017

Image Processing Education

Image denoising in mixed Poisson-Gaussian noise

scientific article published on 13 September 2010

Imaging beyond the super-resolution limits using ultrastructure expansion microscopy (UltraExM)

Imaging cellular ultrastructures using expansion microscopy (U-ExM)

scientific article published on 17 December 2018

Imaging neural activity in the ventral nerve cord of behaving adult Drosophila

scientific article published in Nature Communications

Integrated wavelet processing and spatial statistical testing of fMRI data

scientific article

Invariances, Laplacian-like wavelet bases, and the whitening of fractal processes

scientific article published in April 2009

Isotropic inverse-problem approach for two-dimensional phase unwrapping

scientific article published on June 2015

Isotropic polyharmonic B-splines: scaling functions and wavelets

scientific article published in November 2005

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM

scientific article published on 01 April 2020

Joint absorption and phase retrieval in grating-based x-ray radiography

scientific article

Landmark-Based Shape Encoding and Sparse-Dictionary Learning in the Continuous Domain

scientific article published on 12 October 2017

Linear interpolation revitalized

scientific article published in May 2004

Local demodulation of holograms using the Riesz transform with application to microscopy

scientific article

Lung tissue classification using wavelet frames

scientific article published in January 2007

Mathematical properties of the JPEG2000 wavelet filters

scientific article published in January 2003

Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames

scientific article published on 22 March 2016

Model-based 2.5-d deconvolution for extended depth of field in brightfield microscopy

scientific article published in July 2008

Monte-Carlo sure: a black-box optimization of regularization parameters for general denoising algorithms

scientific article published in September 2008

Multi-target tracking of packed yeast cells

Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip

scientific article published on 01 November 2018

Multiple contrast metrics from the measurements of a digital confocal microscope ⬇️

scientific article published on June 12, 2013

Multiresolution Subdivision Snakes.

scientific article

Multiresolution moment filters: theory and applications

scientific article published in April 2004

Multiresolution monogenic signal analysis using the Riesz-Laplace wavelet transform

scientific article

Multiresolution spline-based 3D/2D registration of CT volume and C-arm images for computer-assisted surgery

Multiresolution-based registration of a volume to a set of its projections

Multiscale motion mapping: a novel computer vision technique for quantitative, objective echocardiographic motion measurement independent of Doppler: first clinical description and validation

scientific article

Myocardial motion analysis from B-mode echocardiograms

scientific article published in April 2005

On regularized reconstruction of vector fields

scientific article published on 09 June 2011

Optical imaging using binary sensors

scientific article published in March 2010

Optimized Kaiser-Bessel Window Functions for Computed Tomography

scientific article published on 01 July 2015

Optimized steerable wavelets for texture analysis of lung tissue in 3-D CT: Classification of usual interstitial pneumonia

article published in 2015

Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression.

scientific article

Periodic Splines and Gaussian Processes for the Resolution of Linear Inverse Problems

scholarly article

Phase Retrieval: From Computational Imaging to Machine Learning: A tutorial

scientific article published in January 2023

Pocket guide to solve inverse problems with GlobalBioIm

scholarly article

Point Similarity Measures Based on MRF Modeling of Difference Images for Spline-Based 2D-3D Rigid Registration of X-Ray Fluoroscopy to CT Images

Poisson image reconstruction with Hessian Schatten-norm regularization

scientific article published on 3 July 2013

Polyharmonic smoothing splines and the multidimensional Wiener filtering of fractal-like signals

scientific article published in September 2006

Precision isosurface rendering of 3D image data

scientific article

Proximity operators for phase retrieval.

scientific article published in September 2016

Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

scientific article published on 01 June 2019

Quantitative evaluation of software packages for single-molecule localization microscopy.

scientific article

Realistic Analytical Phantoms for Parallel Magnetic Resonance Imaging ⬇️

scientific article published on October 28, 2011

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy

scientific article published on 01 May 2018

Reconstruction of dynamic PET data using spatio-temporal wavelet l(1) regularization

scientific article

Reconstruction of large, irregularly sampled multidimensional images. A tensor-based approach

scientific article published on 27 September 2010

Regularized interpolation for noisy images

scientific article published in February 2010

Robust real-time segmentation of images and videos using a smooth-spline snake-based algorithm

scientific article published in July 2005

Snakes with an ellipse-reproducing property

scientific article published on 29 September 2011

Sparse stochastic processes and discretization of linear inverse problems.

scientific article

Sparsity-driven reconstruction for FDOT with anatomical priors

scientific article published on 15 April 2011

Spatio-temporal nonrigid registration for ultrasound cardiac motion estimation

scientific article published in September 2005

Spline based iterative phase retrieval algorithm for X-ray differential phase contrast radiography

scientific article published on April 2015

Spline-based deforming ellipsoids for interactive 3D bioimage segmentation.

scientific article published on 22 May 2013

Spontaneous NA+ transients in individual mitochondria of intact astrocytes

scientific article published in February 2008

SpotCaliper: fast wavelet-based spot detection with accurate size estimation

scientific article published on 10 December 2015

Statistical analysis of functional MRI data in the wavelet domain ⬇️

scientific article published on April 1, 1998

Steerable Wavelet Machines (SWM): Learning Moving Frames for Texture Classification.

scientific article published on 18 January 2017

Steerable features for statistical 3D dendrite detection

article

Steerable pyramids and tight wavelet frames in L2(R(d)).

scientific article published on 7 April 2011

Stressed mycobacteria use the chaperone ClpB to sequester irreversibly oxidized proteins asymmetrically within and between cells

scientific article published on 22 January 2015

Sum and difference histograms for texture classification

scientific article published on January 1, 1986

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

scientific article published on 08 April 2019

Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters

scientific article published in April 2009

Support and approximation properties of Hermite splines

scientific article published on 01 April 2020

Suppression of the zero-order term in off-axis digital holography through nonlinear filtering

scientific article

Surfing the brain

scientific article

Template-free wavelet-based detection of local symmetries

scientific article published on 21 May 2015

The ovuscule.

scientific article

The pairing of a wavelet basis with a mildly redundant analysis via subband regression

scientific article published in November 2008

Transforms and Operators for Directional Bioimage Analysis: A Survey.

scientific article published on January 2016

Trends in Bioimaging and Signal Processing [In the Spotlight]

scholarly article by Jean-Christophe Olivio-Marin et al published November 2011 in IEEE: Signal Processing Magazine

Unsupervised image classification of medical ultrasound data by multiresolution elastic registration

scientific article published in July 2006

Unwarping of slightly distorted periodic structures using bidimensional polynomial representations

scientific article published in 1987

User-friendly semiautomated assembly of accurate image mosaics in microscopy

scientific article published in February 2007

Variational B-spline level-set: a linear filtering approach for fast deformable model evolution.

scientific article published on 28 April 2009

Variational Phase Imaging Using the Transport-of-Intensity Equation

scientific article published on 17 December 2015

Variational image reconstruction from arbitrarily spaced samples: a fast multiresolution spline solution

scientific article published in April 2005

Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering.

scientific article published in February 2018

WSPM: wavelet-based statistical parametric mapping

scientific article published on 19 June 2007

Wavelet steerability and the higher-order Riesz transform

scientific article published on 22 December 2009

Wavelet-based multi-resolution statistics for optical imaging signals: Application to automated detection of odour activated glomeruli in the mouse olfactory bulb

scientific article published on 19 December 2006

Wavelets: on the virtues and applications of the mathematical microscope

scientific article

l(p)-Multiresolution analysis: how to reduce ringing and sparsify the error

scientific article

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