List of works - Leen Stougie

A Combinatorial Algorithm for Microbial Consortia Synthetic Design

scientific article published on 4 July 2016

A note on the complexity of finding and enumerating elementary modes

scientific article published on 03 December 2009

A realistic model under which the genetic code is optimal

scientific article published on 23 July 2013

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks

scientific article published on 10 July 2012

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

scientific article

BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

article

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

scientific article published on March 2013

Computational complexity of stochastic programming problems

Constructing Level-2 Phylogenetic Networks from Triplets

scholarly article by Leo van Iersel et al published 2008 in Lecture Notes in Computer Science

Constructing level-2 phylogenetic networks from triplets

scientific article published in October 2009

Enumeration of minimal stoichiometric precursor sets in metabolic networks

scientific article

Erratum to: Computational complexity of stochastic programming problems ⬇️

scholarly article published in Mathematical Programming

Fast flux module detection using matroid theory.

scientific article published on 7 January 2015

Full-length de novo viral quasispecies assembly through variation graph construction

scientific article published on 01 December 2019

Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata

scientific article

MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network

scientific article published on 01 January 2020

Modes and cuts in metabolic networks: complexity and algorithms

scientific article

Networks: expanding evolutionary thinking

scientific article published on 11 June 2013

On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems.

scientific article published on 22 August 2017

Optimal Algorithms and a PTAS for Cost-Aware Scheduling

Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks

scientific article published on 15 August 2012

Prefix Reversals on Binary and Ternary Strings

Random walks on the vertices of transportation polytopes with constant number of sources

scholarly article by Mary Cryan et al published October 2008 in Random Structures and Algorithms

Scheduling Real-Time Mixed-Criticality Jobs

article published in 2012

Scheduling Real-Time Mixed-Criticality Jobs

Shorelines of islands of tractability: algorithms for parsimony and minimum perfect phylogeny haplotyping problems

scientific article published in April 2008

Some Mathematical Refinements Concerning Error Minimization in the Genetic Code ⬇️

scientific article published on September 1, 2011

Strong LP formulations for scheduling splittable jobs on unrelated machines

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

scientific article

List of works by Leen Stougie

A Combinatorial Algorithm for Microbial Consortia Synthetic Design

A note on the complexity of finding and enumerating elementary modes

A realistic model under which the genetic code is optimal

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

Computational complexity of stochastic programming problems

Constructing Level-2 Phylogenetic Networks from Triplets

Constructing level-2 phylogenetic networks from triplets

Enumeration of minimal stoichiometric precursor sets in metabolic networks

Erratum to: Computational complexity of stochastic programming problems ⬇️

Fast flux module detection using matroid theory.

Full-length de novo viral quasispecies assembly through variation graph construction

Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata

MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network

Modes and cuts in metabolic networks: complexity and algorithms

Networks: expanding evolutionary thinking

On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems.

Optimal Algorithms and a PTAS for Cost-Aware Scheduling

Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks

Prefix Reversals on Binary and Ternary Strings

Random walks on the vertices of transportation polytopes with constant number of sources

Scheduling Real-Time Mixed-Criticality Jobs

Scheduling Real-Time Mixed-Criticality Jobs

Shorelines of islands of tractability: algorithms for parsimony and minimum perfect phylogeny haplotyping problems

Some Mathematical Refinements Concerning Error Minimization in the Genetic Code ⬇️

Strong LP formulations for scheduling splittable jobs on unrelated machines

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Universal Sequencing on a Single Machine

Universal Sequencing on an Unreliable Machine

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.