List of works by Alan Mitchell Durham

A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages

scientific article

A transcriptome analysis of the Aedes aegypti vitellogenic fat body ⬇️

scientific article

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

scientific article published on 01 December 2019

Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb).

scientific article

CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts

scientific article published on 27 May 2020

Computational methods in noncoding RNA research

scientific article published on 04 September 2007

DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence

scientific article

Decreasing the number of false positives in sequence classification

scientific article

EGene: a configurable pipeline generation system for automated sequence analysis

scientific article

Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates

scientific article published on 7 August 2006

GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data

scientific article

High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research.

scientific article

Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite

scientific article published on 11 May 2006

Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases

scientific article published on March 2012

Noncoding RNAs Databases: Current Status and Trends

scientific article published on 01 January 2019

Origins of sequence diversity in the malaria vaccine candidate merozoite surface protein-2 (MSP-2) in Amazonian isolates of Plasmodium falciparum.

scientific article published on 5 April 2006

Pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of Plasmodium vivax in human patients

scientific article

Sequence and structural analysis of the 5' noncoding region of hepatitis C virus in patients with chronic infection.

scientific article

Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization

scientific article

Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma

scientific article published on 24 June 2015

TRAP: automated classification, quantification and annotation of tandemly repeated sequences.

scientific article published on 6 December 2005

The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria

scientific article published on 14 February 2013

ToPS: a framework to manipulate probabilistic models of sequence data

scientific article

ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages

scientific article published in 2024

Using bioinformatics tools to study the role of microRNA in cancer

scientific article

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