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List of works by Joachim Selbig

9 Phylogeny and evolution of Annelida based on molecular data

scholarly article

A "crossomics" study analysing variability of different components in peripheral blood of healthy caucasoid individuals

scientific article

A MATLAB toolbox for structural kinetic modeling ⬇️

scientific article published on July 30, 2012

A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness

scientific article published on 17 November 2004

A distinct metabolic signature predicts development of fasting plasma glucose ⬇️

scientific article published on February 2, 2012

A gentle guide to the analysis of metabolomic data

scientific article

A new network model explains the evolution of plant-specific metabolic networks

article

A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research

scientific article published on 21 May 2008

Algebraic connectivity may explain the evolution of gene regulatory networks

article

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information

scientific article published on 18 December 2012

BioMiner: Paving the Way for Personalized Medicine

scientific article published on 20 April 2015

Bioinformatics approach to predicting HIV drug resistance

scientific article

Biological cluster evaluation for gene function prediction

scientific article published on 08 January 2010

Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach ⬇️

scientific article

Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells

scientific article published on 22 August 2014

Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells ⬇️

scientific article published on May 14, 2011

Complexity of automated gene annotation

scientific article published on 08 January 2011

Computational methods for the design of effective therapies against drug resistant HIV strains

scientific article

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

article

Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern recognition for multiple biomarker selection

scholarly article by Katja Morgenthal et al published April 2005 in Metabolomics

Data Integration, Metabolic Networks and Systems Biology

Data Integration, Metabolic Networks and Systems Biology

Decision tree supported substructure prediction of metabolites from GC-MS profiles

scientific article

Decision trees as a simple-to-use and reliable tool to identify individuals with impaired glucose metabolism or type 2 diabetes mellitus ⬇️

scientific article published on August 6, 2010

Deducing hybrid performance from parental metabolic profiles of young primary roots of maize by using a multivariate diallel approach

scientific article published on 7 January 2014

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

scientific article

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach.

scientific article

Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype

scientific article

Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis

scientific article published on 17 November 2009

Estimating HIV evolutionary pathways and the genetic barrier to drug resistance

scientific article published on 28 April 2005

Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data

scientific article

Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy

scientific article

Evolutionary significance of metabolic network properties

scientific article published on 30 November 2011

ExPlanes: exploring planes in triplet data

scientific article

Exercise training alters DNA methylation patterns in genes related to muscle growth and differentiation in mice

scientific article published on 24 March 2015

Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data

scientific article

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

scientific article

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks ⬇️

scientific article published on April 23, 2012

From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle

scientific article published on 7 March 2007

Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes

scientific article

Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects

scientific article

Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.

scientific article

Hardness and Approximability of the Inverse Scope Problem

Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids.

scientific article published on 12 June 2012

Hypothesis-driven approach to predict transcriptional units from gene expression data

scientific article

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

scientific article published in 2009

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations

scientific article published on 28 November 2007

Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions

scientific article published in 2013

Improved heterosis prediction by combining information on DNA- and metabolic markers

scientific article

Integrated data analysis for genome-wide research

scientific article

Integrating functional knowledge during sample clustering for microarray data using unsupervised decision trees.

scientific article

Integration of a systems biological network analysis and QTL results for biomass heterosis in Arabidopsis thaliana

scientific article

Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana

scientific article

Involvement of TBL/DUF231 proteins into cell wall biology

scientific article published on August 2010

Isolation and characterization of bone marrow-derived progenitor cells from malignant gliomas

scientific article published on November 1, 2012

Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks

scientific article published in January 2009

Learning multiple evolutionary pathways from cross-sectional data

scientific article

MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.

scientific article published on 26 May 2011

Mass-balanced randomization of metabolic networks

scientific article published on 23 March 2011

Mesenchymal stem cells and glioma cells form a structural as well as a functional syncytium in vitro

scientific article published on 29 December 2011

MetaGeneAlyse: analysis of integrated transcriptional and metabolite data

scientific article

Metabolic networks are NP-hard to reconstruct

scientific article

Metabolic profiling reveals key metabolic features of renal cell carcinoma

scientific article

Metabolite profile analysis: from raw data to regression and classification

scientific article

Metabolomic and transcriptomic stress response of Escherichia coli

scientific article

Metabolomics of temperature stress

scientific article published on February 2008

Methods for optimizing antiviral combination therapies

scientific article

Mode of inheritance of primary metabolic traits in tomato

scientific article published on 25 March 2008

More effort - more results: recent advances in integrative 'omics' data analysis

scientific article

Mtreemix: a software package for learning and using mixture models of mutagenetic trees

scientific article published on 18 January 2005

Network structure and biological function: reconstruction, modeling, and statistical approaches

scientific article published on 11 June 2009

Non-linear PCA: a missing data approach

scientific article

PaVESy: Pathway Visualization and Editing System

scientific article published on 22 April 2004

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

scientific article published on 12 September 2003

Phenomic prediction of maize hybrids

scientific article

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

scientific article published on 4 November 2007

Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition

scientific article published on 21 December 2009

Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers

scientific article published on 13 November 2009

Principal Components Analysis ⬇️

scientific article published on January 1, 2013

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

scientific article

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

scientific article

QTL analysis of early stage heterosis for biomass in Arabidopsis

scientific article

Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns

scientific article

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

scientific article

Robustness of metabolic networks: a review of existing definitions

scientific article published on 25 June 2011

SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data

scientific article

Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information

scientific article published on 01 August 2003

Spatiotemporal dynamics of the Calvin cycle: multistationarity and symmetry breaking instabilities.

scientific article published on 12 November 2010

Species-specific analysis of protein sequence motifs using mutual information

scientific article

Stability of metabolic correlations under changing environmental conditions in Escherichia coli--a systems approach

scientific article

Starch as a major integrator in the regulation of plant growth

scholarly article

Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks

scientific article published on September 2012

Structural kinetic modeling of metabolic networks

scholarly article

Systematic Analysis of Stability Patterns in Plant Primary Metabolism ⬇️

scientific article published on April 13, 2012

Tenofovir resistance and resensitization

scientific article published on November 2003

The Golm Metabolome Database: a database for GC-MS based metabolite profiling

scholarly article by Jan Hummel et al published 2007 in Topics in current genetics

The expression of Wnt-inhibitor DKK1 (Dickkopf 1) is determined by intercellular crosstalk and hypoxia in human malignant gliomas

scientific article published on 27 April 2014

The metabolic response of heterotrophic Arabidopsis cells to oxidative stress

scientific article published in 2007

The metabolic signature related to high plant growth rate in Arabidopsis thaliana ⬇️

scientific article (publication date: 13 March 2007)

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

scientific article published on 6 December 2006

The regulatory code for transcriptional response diversity and its relation to genome structural properties in Arabidopsis thaliana

scholarly article by Dirk Walther published in January 2005

The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks

scientific article published on 13 November 2007

Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana

scientific article

Understanding the relationship between cotton fiber properties and non-cellulosic cell wall polysaccharides

scientific article

Validation and functional annotation of expression-based clusters based on gene ontology

scientific article published on 15 August 2006

Visualization and analysis of molecular data

scientific article

pcaMethods--a bioconductor package providing PCA methods for incomplete data

scientific article

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