List of works - Vincent Moulton

A toolkit for analysing large-scale plant small RNA datasets

scientific article

Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level.

scientific article

CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data

scientific article (publication date: July 2013)

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench

scientific article

Computational Modeling of the Regulatory Network Organizing the Wound Response in Arabidopsis thaliana ⬇️

scientific article published on August 31, 2012

Computing evolutionary distinctiveness indices in large scale analysis ⬇️

scientific article (publication date: 13 April 2012)

Constructing and Drawing Regular Planar Split Networks ⬇️

scientific article published on August 4, 2011

DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment ⬇️

scientific article published on December 1, 1997

Deciphering the diversity of small RNAs in plants: the long and short of it.

scientific article

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

scientific article

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions ⬇️

scientific article published on August 26, 2012

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

scientific article published on 28 April 2010

FiRePat-Finding Regulatory Patterns between sRNAs and Genes

article

Generating functions for multi-labeled trees ⬇️

scientific article published on September 4, 2012

Global discovery and characterization of small non-coding RNAs in marine microalgae

scientific article

High throughput sequencing of microRNAs in chicken somites

scientific article published on 27 March 2009

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

scientific article

Identification of novel small RNAs in tomato (Solanum lycopersicum).

scientific article published on 6 April 2007

MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect.

scientific article published on 31 March 2017

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome

scientific article published on 26 November 2012

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

scientific article published on 29 March 2012

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

scientific article published on 9 May 2011

Reducing ligation bias of small RNAs in libraries for next generation sequencing

scientific article

Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches ⬇️

scientific article published on January 1, 2011

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets ⬇️

scientific article published on 24 May 2012

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

scientific article published on 12 April 2017

List of works by Vincent Moulton

A toolkit for analysing large-scale plant small RNA datasets

Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level.

CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench

Computational Modeling of the Regulatory Network Organizing the Wound Response in Arabidopsis thaliana ⬇️

Computing evolutionary distinctiveness indices in large scale analysis ⬇️

Constructing and Drawing Regular Planar Split Networks ⬇️

DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment ⬇️

Deciphering the diversity of small RNAs in plants: the long and short of it.

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions ⬇️

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

FiRePat-Finding Regulatory Patterns between sRNAs and Genes

Generating functions for multi-labeled trees ⬇️

Global discovery and characterization of small non-coding RNAs in marine microalgae

High throughput sequencing of microRNAs in chicken somites

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

Identification of novel small RNAs in tomato (Solanum lycopersicum).

MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect.

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

Reducing ligation bias of small RNAs in libraries for next generation sequencing

Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches ⬇️

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets ⬇️

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets