List of works - Robert Giegerich

A comprehensive comparison of comparative RNA structure prediction approaches

scientific article

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

scientific article published in 2010

A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis

scientific article

Abstract shape analysis of RNA.

scientific article published on January 2014

Abstract shapes of RNA

scientific article

Ambivalent covariance models

scientific article

Beyond Mfold: recent advances in RNA bioinformatics

scientific article

Complete probabilistic analysis of RNA shapes

scientific article published in 2006

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

scientific article

Conveyor: a workflow engine for bioinformatic analyses.

scientific article

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

scientific article

Effective ambiguity checking in biosequence analysis

scientific article

Efficient computation of absent words in genomic sequences

scientific article

Evaluating the predictability of conformational switching in RNA.

scientific article

Fast and effective prediction of microRNA/target duplexes

scientific article

Fast index based algorithms and software for matching position specific scoring matrices

scientific article

Faster computation of exact RNA shape probabilities

scientific article

Fine-tuning structural RNA alignments in the twilight zone

scientific article

GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing

scientific article

GenDB--an open source genome annotation system for prokaryote genomes

scientific article

GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.

scientific article

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.

scientific article

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.

scientific article

Introduction to RNA secondary structure comparison

scientific article published on January 2014

Introduction to stochastic context free grammars

scientific article published on January 2014

Local similarity in RNA secondary structures.

scientific article

Locomotif: from graphical motif description to RNA motif search

scientific article

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

scientific article

Pareto optimization in algebraic dynamic programming

scientific article

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.

scientific article

Pure multiple RNA secondary structure alignments: a progressive profile approach

scientific article

RNA-related tools on the Bielefeld Bioinformatics Server

scientific article

Riboregulation in plant-associated α-proteobacteria

scientific article

Semantics and ambiguity of stochastic RNA family models

scientific article published on March 2011

Shape based indexing for faster search of RNA family databases

scientific article

The RNA shapes studio

scientific article

Thermodynamic matchers for the construction of the cuckoo RNA family

scientific article published on January 2015

Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server

scientific article published on 16 January 2008

Versatile and declarative dynamic programming using pair algebras

scientific article

WAMI: a web server for the analysis of minisatellite maps

scientific article

XML schemas for common bioinformatic data types and their application in workflow systems

scientific article

XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis

scientific article

e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences

scientific article published on July 2004

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

scientific article

List of works by Robert Giegerich

A comprehensive comparison of comparative RNA structure prediction approaches

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis

Abstract shape analysis of RNA.

Abstract shapes of RNA

Ambivalent covariance models

Beyond Mfold: recent advances in RNA bioinformatics

Complete probabilistic analysis of RNA shapes

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

Conveyor: a workflow engine for bioinformatic analyses.

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

Effective ambiguity checking in biosequence analysis

Efficient computation of absent words in genomic sequences

Evaluating the predictability of conformational switching in RNA.

Fast and effective prediction of microRNA/target duplexes

Fast index based algorithms and software for matching position specific scoring matrices

Faster computation of exact RNA shape probabilities

Fine-tuning structural RNA alignments in the twilight zone

GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing

GenDB--an open source genome annotation system for prokaryote genomes

GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.

Introduction to RNA secondary structure comparison

Introduction to stochastic context free grammars

Local similarity in RNA secondary structures.

Locomotif: from graphical motif description to RNA motif search

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

Pareto optimization in algebraic dynamic programming

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.

Pure multiple RNA secondary structure alignments: a progressive profile approach

RNA-related tools on the Bielefeld Bioinformatics Server

Riboregulation in plant-associated α-proteobacteria

Semantics and ambiguity of stochastic RNA family models

Shape based indexing for faster search of RNA family databases

The RNA shapes studio

Thermodynamic matchers for the construction of the cuckoo RNA family

Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server

Versatile and declarative dynamic programming using pair algebras

WAMI: a web server for the analysis of minisatellite maps

XML schemas for common bioinformatic data types and their application in workflow systems

XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis

e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows