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List of works by Lucian Ilie

A Simple Algorithm for Computing the Lempel Ziv Factorization

A comparison of index-based lempel-Ziv LZ77 factorization algorithms

article

BOND: Basic OligoNucleotide Design

scientific article published on February 27, 2013

Computing Longest Previous Factor in linear time and applications

Computing the Longest Previous Factor

Correcting Illumina data

scientific article

DELPHI: accurate deep ensemble model for protein interaction sites prediction

scientific article published on 25 August 2020

E-MEM: efficient computation of maximal exact matches for very large genomes

scientific article

Fast computation of neighbor seeds

scientific article

HISEA: HIerarchical SEed Aligner for PacBio data

scientific article published on 19 December 2017

HiTEC: accurate error correction in high-throughput sequencing data

scientific article

LASER: Large genome ASsembly EvaluatoR

scientific article published on 24 November 2015

Maximal repetitions in strings

Multiple spaced seeds for homology search

scientific article published on 5 September 2007

Predicting Protein-Protein Interactions Using SPRINT

scientific article published on 01 January 2020

RACER: Rapid and accurate correction of errors in reads

scientific article published on 12 July 2013

Repetitions in strings: Algorithms and combinatorics

SAGE2: Parallel Human Genome Assembly

scientific article published on 13 October 2017

SAGE: String-overlap Assembly of GEnomes

scientific article

SHRiMP2: Sensitive yet Practical Short Read Mapping

scientific article published on January 28, 2011

SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome

scientific article published on 15 November 2017

The “runs” conjecture