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List of works by Daniel A. Ashlock

A new resource for cereal genomics: 22K barley GeneChip comes of age.

scientific article published in March 2004

A novel representation for boolean networks designed to enhance heritability and scalability

A strategy for assembling the maize (Zea mays L.) genome

scientific article

Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize

scientific article

Computational Intelligence Techniques in Bioinformatics and Bioengineering [Guest Editorial]

scientific article published in August 2018

DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources.

scientific article

Development of antibiotic regimens using graph based evolutionary algorithms

scientific article published on 16 September 2013

Evaluation of five ab initio gene prediction programs for the discovery of maize genes

article

Evolution and instability in ring species complexes: an in silico approach to the study of speciation

scientific article published on 16 March 2010

Evolution of the modular, disordered stress proteins known as dehydrins

scientific article published on 06 February 2019

Evolving polyomino puzzles

Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death

scientific article published in October 2008

Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize

scientific article

Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks

scientific article published on 13 June 2019

Inferring bistable lac operen Boolean regulatory networks using evolutionary computation

MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering

scientific article published on 22 August 2009

Maize Mu transposons are targeted to the 5' untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome

scientific article

Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution.

scientific article published on 16 November 2006

Network induction for epidemic profiles with a novel representation

scientific article

On the synthesis of DNA error correcting codes.

scientific article

Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas.

scientific article

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes

scientific article

Restarting and recentering genetic algorithm variations for DNA fragment assembly: The necessity of a multi-strategy approach

scientific article published on 10 August 2016

Sequence classification with side effect machines evolved via ring optimization.

scientific article published on 18 April 2013

Starch formation inside plastids of higher plants

scientific article published on 17 May 2018

Testing the rogue taxa hypothesis for clustering instability

scientific article published on 04 April 2019