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List of works by Erik Aurell

A computational study of lambda-lac mutants

scientific article published on 06 October 2009

A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis ⬇️

scientific article published on January 25, 2011

Advective-diffusive motion on large scales from small-scale dynamics with an internal symmetry. ⬇️

scientific article published on 30 June 2016

Anomalous thermodynamics at the microscale

scientific article published on 27 December 2012

Behavior of heuristics on large and hard satisfiability problems

scientific article published on 18 September 2006

Binary tree models of high-Reynolds-number turbulence

Boundary layers in stochastic thermodynamics ⬇️

scientific article published on February 6, 2012

Characteristic functions of quantum heat with baths at different temperatures

scientific article published on 01 June 2018

Circumspect descent prevails in solving random constraint satisfaction problems.

scholarly article

Comparing Beliefs, Surveys, and Random Walks ⬇️

scientific article published in January 2005

Cooperative action in eukaryotic gene regulation: physical properties of a viral example

scientific article

DCA for genome-wide epistasis analysis: the statistical genetics perspective

scientific article published on 29 January 2019

Detection and quantitative estimation of spurious double stranded DNA formation during reverse transcription in bacteria using tagRNA-seq

scientific article published on 15 July 2015

Dynamic insights on transcription initiation and RNA processing during bacterial adaptation

scientific article published on 28 January 2020

Dynamic mean-field and cavity methods for diluted Ising systems ⬇️

scientific article published on March 16, 2012

Dynamic message-passing approach for kinetic spin models with reversible dynamics

scientific article

Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape

scientific article published on 29 February 2016

Entropy production of a Brownian ellipsoid in the overdamped limit. ⬇️

scientific article

Epstein-Barr virus latency switch in human B-cells: a physico-chemical model

scientific article

Erratum: Characteristic functions of quantum heat with baths at different temperatures [Phys. Rev. E 97, 062117 (2018)]

scientific article published on 01 September 2019

Exploring the diluted ferromagnetic p-spin model with a cavity master equation

scientific article published on 01 May 2018

Fröhlich-coupled qubits interacting with fermionic baths

scientific article published on 01 July 2020

Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes

scientific article published on 17 November 2020

Global gene expression analysis by combinatorial optimization

scientific article published in January 2004

Global picture of self-similar and non-self-similar decay in Burgers turbulence

scientific article published on 20 May 2005

Hierarchical tree-model of 2D-turbulence

scientific article published in April 1994

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

scientific article published on 11 January 2013

Improving contact prediction along three dimensions ⬇️

scientific article

Inferring genetic fitness from genomic data

scientific article published on 01 May 2020

Inferring network connectivity using kinetic Ising models

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

scientific article

Inverse Ising Inference Using All the Data ⬇️

scientific article published on March 2, 2012

Landscape of RNA polyadenylation in E. coli

scientific article

Large deviations and fluctuation theorem for the quantum heat current in the spin-boson model

scientific article published on 01 May 2020

Local search methods based on variable focusing for random K-satisfiability

scientific article

Maximum likelihood reconstruction for Ising models with asynchronous updates

scientific article published on 20 May 2013

Mechanisms for lateral turns in lamprey in response to descending unilateral commands: a modeling study

scientific article published in January 2002

Network inference using asynchronously updated kinetic Ising model ⬇️

scientific article published on April 29, 2011

Optimal Protocols and Optimal Transport in Stochastic Thermodynamics ⬇️

scientific article published on June 20, 2011

Quasi-potential landscape in complex multi-stable systems ⬇️

scientific article published on August 29, 2012

Refined Second Law of Thermodynamics for Fast Random Processes

scientific article published on 13 April 2012

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition ⬇️

scientific article

Self-preservation of large-scale structures in Burgers' turbulence

scientific article

Stability puzzles in phage lambda

scientific article published on 16 May 2002

Statistical physics of pairwise probability models

scientific article published on 17 November 2009

Steady diffusion in a drift field: A comparison of large-deviation techniques and multiple-scale analysis.

scientific article published on 27 September 2017

Systems biology is taking off.

scientific article

The Maximum Entropy Fallacy Redux?

scientific article

The bulk and the tail of minimal absent words in genome sequences ⬇️

scientific article published on 4 April 2016

The stochastic thermodynamics of a rotating Brownian particle in a gradient flow

scientific article published on 21 July 2015

Theory of Nonequilibrium Local Search on Random Satisfaction Problems

scientific article published on 01 December 2019

Thermal power of heat flow through a qubit

scientific article published on 01 April 2019

Time reversals of irreversible quantum maps ⬇️

scientific article published on 24 August 2015

Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae.

scientific article published on 22 June 2007

Unified picture of strong-coupling stochastic thermodynamics and time reversals

scientific article published on 01 April 2018

Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis ⬇️

scientific article published on 3 March 2015

Witness of unsatisfiability for a random 3-satisfiability formula

scientific article published on 20 May 2013

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