List of works - Ben-Zion Chor

A Geometric Approach to Betweenness

scientific article (publication date: November 1998)

A deep neural network approach for learning intrinsic protein-RNA binding preferences

scientific article published on 01 September 2018

An improved parallel algorithm for integer GCD

Analytic solutions of maximum likelihood on forks of four taxa.

scientific article published in August 2007

Ancestral maximum likelihood of evolutionary trees is hard

scientific article published in June 2004

Approximate maximum parsimony and ancestral maximum likelihood

scientific article

BioNSi: A Discrete Biological Network Simulator Tool

scientific article published on 29 June 2016

Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length

scholarly article by Benny Chor published in July 2007

CRISPR Detection From Short Reads Using Partial Overlap Graphs

scientific article published on 8 April 2016

Cases in which ancestral maximum likelihood will be confusingly misleading

scientific article published on 2 March 2017

Computational thinking in life science education

scientific article

Detecting Phylogenetic Signals in Eukaryotic Whole Genome Sequences ⬇️

scientific article published on August 1, 2012

Discovering local structure in gene expression data: the order-preserving submatrix problem

scientific article

Do tree split probabilities determine the branch lengths?

scientific article published on 3 April 2015

Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data

scientific article

Forbidden penta-peptides

scientific article

Genetic code symmetry and efficient design of GC-constrained coding sequences

scientific article

Genomic DNA k-mer spectra: models and modalities

scientific article published on 08 October 2009

Genomic analysis of COP9 signalosome function in Drosophila melanogaster reveals a role in temporal regulation of gene expression

scientific article published on 08 May 2007

Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights

scientific article

Information Theoretic Approaches to Whole Genome Phylogenies

scholarly article by David Burstein et al published 2005 in Lecture Notes in Computer Science

Inter-chromosomal k-mer distances

scientific article published on 06 September 2021

Inversion symmetry of DNA k-mer counts: validity and deviations.

scientific article

Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

scientific article published on 3 September 2009

Linear separability of gene expression data sets

scientific article

Maximum likelihood Jukes-Cantor triplets: analytic solutions

scientific article published on 30 November 2005

Maximum likelihood molecular clock comb: analytic solutions

scientific article published in April 2006

Maximum likelihood of evolutionary trees: hardness and approximation

scientific article published in June 2005

Molecular clock fork phylogenies: closed form analytic maximum likelihood solutions

scientific article published in December 2004

On the number of ordered factorizations of natural numbers

scientific article published in 2000

Preface: RECOMB 2012 ⬇️

scientific article published on February 1, 2013

Private information retrieval

scientific article published in Journal of the ACM in 1998

Representative Selection in Nonmetric Datasets ⬇️

String graph construction using incremental hashing

scientific article published on 02 September 2014

The Functional 3D Organization of Unicellular Genomes

scientific article published on 04 September 2019

The average common substring approach to phylogenomic reconstruction

scientific article

The bit extraction problem or t-resilient functions

The effective application of a discrete transition model to explore cell-cycle regulation in yeast ⬇️

scientific article published on August 6, 2013

List of works by Ben-Zion Chor

A Geometric Approach to Betweenness

A deep neural network approach for learning intrinsic protein-RNA binding preferences

An improved parallel algorithm for integer GCD

Analytic solutions of maximum likelihood on forks of four taxa.

Ancestral maximum likelihood of evolutionary trees is hard

Approximate maximum parsimony and ancestral maximum likelihood

BioNSi: A Discrete Biological Network Simulator Tool

Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length

CRISPR Detection From Short Reads Using Partial Overlap Graphs

Cases in which ancestral maximum likelihood will be confusingly misleading

Computational thinking in life science education

Detecting Phylogenetic Signals in Eukaryotic Whole Genome Sequences ⬇️

Discovering local structure in gene expression data: the order-preserving submatrix problem

Do tree split probabilities determine the branch lengths?

Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data

Forbidden penta-peptides

Genetic code symmetry and efficient design of GC-constrained coding sequences

Genomic DNA k-mer spectra: models and modalities

Genomic analysis of COP9 signalosome function in Drosophila melanogaster reveals a role in temporal regulation of gene expression

Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights

Information Theoretic Approaches to Whole Genome Phylogenies

Inter-chromosomal k-mer distances

Inversion symmetry of DNA k-mer counts: validity and deviations.

Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

Linear separability of gene expression data sets

Maximum likelihood Jukes-Cantor triplets: analytic solutions

Maximum likelihood molecular clock comb: analytic solutions

Maximum likelihood of evolutionary trees: hardness and approximation

Molecular clock fork phylogenies: closed form analytic maximum likelihood solutions

On the number of ordered factorizations of natural numbers

Preface: RECOMB 2012 ⬇️

Private information retrieval

Representative Selection in Nonmetric Datasets ⬇️

String graph construction using incremental hashing

The Functional 3D Organization of Unicellular Genomes

The average common substring approach to phylogenomic reconstruction

The bit extraction problem or t-resilient functions

The effective application of a discrete transition model to explore cell-cycle regulation in yeast ⬇️

The random oracle hypothesis is false

Tight lower bounds for certain parameterized NP-hard problems

Verifiable secret sharing and achieving simultaneity in the presence of faults