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List of works by William J Murphy

28-way vertebrate alignment and conservation track in the UCSC Genome Browser

scientific article (publication date: December 2007)

A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes

scientific article published on 25 September 2006

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

scientific article published on 30 March 2016

A Molecular Classification for the Living Orders of Placental Mammals and the Phylogenetic Placement of Primates

article

A cluster of olfactory receptor genes linked to frugivory in bats

scientific article published on 16 January 2014

A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus

scientific article

A gene catalogue of the euchromatic male-specific region of the horse Y chromosome: comparison with human and other mammals

scientific article

A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae

scientific article

A molecular phylogeny for bats illuminates biogeography and the fossil record

scientific article

A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism

scientific article published on 22 October 2020

A radiation hybrid map of the cat genome: implications for comparative mapping

scientific article

A radiation hybrid mapping panel for the rhesus macaque

scientific article published on 01 November 2001

A rhesus macaque radiation hybrid map and comparative analysis with the human genome

scientific article published on 01 October 2005

Accelerated Evolution of CES7, a Gene Encoding a Novel Major Urinary Protein in the Cat Family ⬇️

scientific article published on October 21, 2010

An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival

scientific article

Applications and efficiencies of the first cat 63K DNA array.

scientific article published on 4 May 2018

Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals

scientific article published on 10 January 2018

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter

scientific article published on 01 December 2019

Author Correction: Applications and efficiencies of the first cat 63K DNA array.

scientific article published on 4 June 2018

Author Correction: Applications and efficiencies of the first cat 63 K DNA array

scientific article published on 12 March 2019

Comparative Phylogeography of Forest-Dependent Mammals Reveals Paleo-Forest Corridors throughout Sundaland

scientific article published on 01 March 2019

Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution

scientific article published on 20 June 2013

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

scientific article

Designing and optimizing comparative anchor primers for comparative gene mapping and phylogenetic inference

scientific article published in January 2007

Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci.

scientific article published on April 1999

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

scientific article

Ecological adaptation determines functional mammalian olfactory subgenomes

scientific article (publication date: 2010)

Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens

scientific article (publication date: October 2011)

Evidence for multiple species of Sunda colugo

scientific article

Evolution of mammalian genome organization inferred from comparative gene mapping

scientific article

Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary

scientific article published on 29 November 2019

Evolutionary conservation of Y chromosome ampliconic gene families despite extensive structural variation

article

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping

scientific article

GENOMICS: On Choosing Mammalian Genomes for Sequencing

scientific article published in Science

Gene conversion between mammalian CCR2 and CCR5 chemokine receptor genes: a potential mechanism for receptor dimerization

scientific article published in June 2007

Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome

scientific article

Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart

scientific article published in Science

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

scientific article

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates

scientific article

Genomics and conservation genetics

scientific article published on 5 September 2006

Genomics. A dog's breakfast?

scientific article published on 01 September 2003

Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes

scientific article published in Nature Communications

Human and feline adipose-derived mesenchymal stem cells have comparable phenotype, immunomodulatory functions, and transcriptome

scientific article published on 20 March 2017

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

scientific article

Inherited motor neuron disease in domestic cats: a model of spinal muscular atrophy

scientific article published on 5 January 2005

Initial sequence and comparative analysis of the cat genome

scientific article

Insertional polymorphisms of endogenous feline leukemia viruses

scientific article

Integration of the feline radiation hybrid and linkage maps

scientific article published on 01 June 2001

Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia

scientific article

Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

scientific article published in 2012

Mammalian evolution and biomedicine: new views from phylogeny

scientific article published on August 2007

Mammalian phylogenomics comes of age

scientific article (publication date: December 2004)

Mapping of 53 loci in American mink (Mustela vison).

scientific article published on September 2003

Mechanisms Underlying Mammalian Hybrid Sterility in Two Feline Interspecies Models

scientific article

Mesozoic origin for West Indian insectivores

scientific article

Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus

scientific article

Molecular and genomic data identify the closest living relative of primates

scientific article

Molecular dating and biogeography of the early placental mammal radiation.

scientific article published in March 2001

Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals

scientific article (publication date: September 2009)

Molecular phylogenetics and the origins of placental mammals

scientific article (publication date: February 2001)

Morphology and placental mammal phylogeny

scientific article published in June 2008

Novel gene acquisition on carnivore Y chromosomes

scientific article

Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats

scientific article published on August 2003

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences

scientific article

Patterns of diversity among SINE elements isolated from three Y-chromosome genes in carnivores

scientific article published on 01 May 2000

Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree

scientific article

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

scientific article

Phylogenomics and the Genetic Architecture of the Placental Mammal Radiation

scientific article published on 23 November 2020

Placental mammal diversification and the Cretaceous-Tertiary boundary

scientific article

Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome

scientific article published in January 2003

Range-Wide Snow Leopard Phylogeography Supports Three Subspecies

scientific article

Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species

scientific article published on 01 October 2019

Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps

scientific article

Resolution of the early placental mammal radiation using Bayesian phylogenetics ⬇️

scientific article (publication date: 14 December 2001)

Response to Comment on "Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification"

scientific article published in Science

Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus) ⬇️

scientific article published on January 1, 2003

Sequence analysis in Bos taurus reveals pervasiveness of X-Y arms races in mammalian lineages

scientific article published on 18 November 2020

Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes

scientific article

Spatiotemporal Genetic Diversity of Lions Reveals the Influence of Habitat Fragmentation Across Africa

scientific article published on 15 July 2020

Technical comment on "The placental mammal ancestor and the post-K-Pg radiation of placentals".

scientific article

The Birth and Death of Olfactory Receptor Gene Families in Mammalian Niche Adaptation

scientific article published on 19 March 2018

The Feline Genome Project

scientific article

The adequacy of morphology for reconstructing the early history of placental mammals

scientific article (publication date: August 2007)

The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region

scientific article published on 09 December 2004

The historical biogeography of Mammalia ⬇️

scientific article (publication date: 12 September 2011)

The late Miocene radiation of modern Felidae: a genetic assessment

scientific article

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

scientific article published in February 2009

The origin of human chromosome 1 and its homologs in placental mammals

scientific article

The promise of comparative genomics in mammals

scientific article

The validity of three snow leopard subspecies: response to Senn et al.

scientific article published on 13 February 2018

Therapeutic Efficacy of Fresh, Allogeneic Mesenchymal Stem Cells for Severe Refractory Feline Chronic Gingivostomatitis.

scientific article published on 15 June 2017

Therapeutic Efficacy of Fresh, Autologous Mesenchymal Stem Cells for Severe Refractory Gingivostomatitis in Cats.

scientific article

Tree House Explorer: A Novel Genome Browser for Phylogenomics

scientific article published in 2022

Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis)

scientific article published on 11 December 2020

Using Illumina next generation sequencing technologies to sequence multigene families in de novo species

scientific article published on 9 March 2013

Using genomic data to unravel the root of the placental mammal phylogeny

scientific article

Waking the undead: Implications of a soft explosive model for the timing of placental mammal diversification.

scientific article

Who's behind that mask and cape? The Asian leopard cat's Agouti (ASIP) allele likely affects coat colour phenotype in the Bengal cat breed

scientific article

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