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List of works by Axel Meyer

2R or not 2R is not the question anymore

A BAC library for the goldfish Carassius auratus auratus (Cyprinidae, Cypriniformes).

scientific article published in November 2006

A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni

scientific article published in January 2006

A comprehensive overview of the developmental basis and adaptive significance of a textbook polymorphism: head asymmetry in the cichlid fish Perissodus microlepis

scientific article published on 25 October 2018

A genomic cluster containing novel and conserved genes is associated with cichlid fish dental developmental convergence

scientific article published on 24 June 2020

A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq)

scientific article (publication date: 2013)

A microsatellite-based genetic linkage map of the cichlid fish, Astatotilapia burtoni (Teleostei): a comparison of genomic architectures among rapidly speciating cichlids

scientific article published on 30 August 2008

A novel song parameter correlates with extra-pair paternity and reflects male longevity

scientific article published on 01 July 2002

A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes

scientific article published on 17 June 2006

A phylogeographic investigation of the hybrid origin of a species of swordtail fish from Mexico

scientific article published on 12 April 2012

A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences.

scientific article

Adaptation in the age of ecological genomics: insights from parallelism and convergence ⬇️

scientific article published on 02 April 2011

Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation ⬇️

scientific article

Adaptive radiation and burst speciation of hillstream cyprinid fish Garra in African river

scientific article published on 4 May 2021

Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes

scientific article

Adjustment of brood care behaviour in the absence of a mate in two species of Nicaraguan crater lake cichlids

article

Agouti-related peptide 2 facilitates convergent evolution of stripe patterns across cichlid fish radiations

scientific article published in Science

An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes

scientific article published on 13 January 2022

An organizer controls the development of the "sword," a sexually selected trait in swordtail fish.

scientific article published in July 2008

Analysis of the very large G-protein coupled receptor gene (Vlgr1/Mass1/USH2C) in zebrafish.

scientific article published in July 2005

Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish

scientific article published on 4 January 2011

Animal tracking meets migration genomics: transcriptomic analysis of a partially migratory bird species.

scientific article published on 17 March 2017

Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs

scientific article

Anthropogenic impact on the historical phytoplankton community of Lake Constance reconstructed by multimarker analysis of sediment-core environmental DNA

scientific article published on 17 October 2020

Are sympatrically speciating Midas cichlid fish special? Patterns of morphological and genetic variation in the closely related species Archocentrus centrarchus

scientific article

Asymmetric admixture and morphological variability at a suture zone: parapatric burbot subspecies (Pisces) in the Mackenzie River basin, Canada

article

Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration

scientific article published on 17 March 2006

Asymmetric paralog evolution between the "cryptic" gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4

article

Asymmetry in genitalia is in sync with lateralized mating behavior but not with the lateralization of other behaviors

scientific article published on 26 April 2019

Base composition, selection, and phylogenetic significance of indels in the recombination activating gene-1 in vertebrates

scientific article published on 16 December 2009

Benefits and limitations of a new genome-based PCR-RFLP genotyping assay (GB-RFLP): A SNP-based detection method for identification of species in extremely young adaptive radiations

scientific article published in March 2022

Between a Rock and a Hard Polytomy: Phylogenomics of the Rock-Dwelling Mbuna Cichlids of Lake Malaŵi

scientific article published on 01 April 2022

Beyond the neckless phenotype: influence of reduced retinoic acid signaling on motor neuron development in the zebrafish hindbrain

scientific article

Biting into the Genome to Phenome Map: Developmental Genetic Modularity of Cichlid Fish Dentitions.

scientific article published on 2 June 2016

Broad taxonomic applicability of microsatellites developed for the highly polymorphic neotropical cichlid, Amphilophus citrinellum

scientific article published in April 2000

CEACAM3: an innate immune receptor directed against human-restricted bacterial pathogens

scientific article published on 07 July 2008

Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake

scientific article published in July 2007

Changes in Behavior With Increasing Experience With a Novel Prey in Fry of the Central American Cichlid, Cichlasoma Managuense (Teleostei: Cichlidae)

Chromosomal rearrangements, phenotypic variation and modularity: a case study from a contact zone between house mouse Robertsonian races in Central Italy

scientific article published on 30 January 2016

Cichlids of the Rift Lakes

article

Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa.

scientific article published in August 1998

Cloning of zebrafish T-box genes tbx15 and tbx18 and their expression during embryonic development

scientific article published in June 2002

Closing of the Tethys Sea and the phylogeny of Eurasian killifishes (Cyprinodontiformes: Cyprinodontidae).

scientific article published in January 2003

Closing the genotype-phenotype gap: emerging technologies for evolutionary genetics in ecological model vertebrate systems.

scientific article published on 7 November 2014

Co-orthology of Pax4 and Pax6 to the fly eyeless gene: molecular phylogenetic, comparative genomic, and embryological analyses

scientific article published in September 2011

Color assortative mating contributes to sympatric divergence of neotropical cichlid fish.

scientific article published on 28 May 2009

Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes)

scientific article published on 28 June 2011

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications

scientific article

Comparative ontogenetic and transcriptomic analyses shed light on color pattern divergence in cichlid fishes

scientific article published on 15 August 2022

Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA.

scientific article

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

scientific article

Complete mitochondrial genome sequences of the South american and the Australian lungfish: testing of the phylogenetic performance of mitochondrial data sets for phylogenetic problems in tetrapod relationships

scientific article

Complete mitochondrial genome suggests diapsid affinities of turtles ⬇️

scientific article

Complete nucleotide sequence of the mitochondrial genome of a salamander, Mertensiella luschani

scientific article published in October 2003

Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, ...

scientific article

Conservation and co-option in developmental programmes: the importance of homology relationships

scientific article

Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes

scientific article published on 25 September 2019

Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

scientific article

Conservation: Nicaragua Canal could wreak environmental ruin

scientific article

Construction of a variability map for eukaryotic large subunit ribosomal RNA.

scientific article published on July 1999

Contrasting signatures of genomic divergence during sympatric speciation

scientific article published on 28 October 2020

Convergent phenotypic evolution of the visual system via different molecular routes: How Neotropical cichlid fishes adapt to novel light environments

scientific article published on 17 July 2018

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

scientific article published in May 2016

Cost of morphological specialization: feeding performance of the two morphs in the trophically polymorphic cichlid fish, Cichlasoma citrinellum

scientific article

Crater lake cichlids individually specialize along the benthic-limnetic axis

scientific article published on 7 March 2014

Crater lake colonization by neotropical cichlid fishes

scientific article published on 27 August 2012

Crater lake habitat predicts morphological diversity in adaptive radiations of cichlid fishes

scientific article

Critical Uncertainties and Gaps in the Environmental- and Social-Impact Assessment of the Proposed Interoceanic Canal through Nicaragua

scientific article published on 2 June 2016

Cyclohexane-1,2-dione hydrolase from denitrifying Azoarcus sp. strain 22Lin, a novel member of the thiamine diphosphate enzyme family

scientific article (publication date: December 2011)

Cyclohexane-1,2-dione hydrolase: A new tool to degrade alicyclic compounds

article published in 2009

Cytochrome b of fish mitochondria is strongly resistant to funiculosin, a powerful inhibitor of respiration.

scientific article

Cytochrome b sequence variation and a molecular phylogeny of the live-bearing fish genus Gambusia (Cyprinodontiformes: Poeciliidae)

scholarly article by Charles Lydeard et al published February 1995 in Canadian Journal of Zoology

Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes

scientific article

Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications

scientific article published on January 2012

Developmental and Cellular Basis of Vertical Bar Color Patterns in the East African Cichlid Fish Haplochromis latifasciatus

scientific article published on 11 February 2020

Die Entschlüsselung des Genoms des Quastenflossers

scientific article published on 30 August 2013

Different sources of allelic variation drove repeated color pattern divergence in cichlid fishes

scientific article published on 17 September 2020

Differential predation on the two colour morphs of Nicaraguan Crater lake Midas cichlid fish: implications for the maintenance of its gold-dark polymorphism

article

Differential regulation of msx genes in the development of the gonopodium, an intromittent organ, and of the "sword," a sexually selected trait of swordtail fishes (Xiphophorus).

scientific article published in September 2003

Dissecting a potential spandrel of adaptive radiation: Body depth and pectoral fin ecomorphology coevolve in Lake Malawi cichlid fishes

article

Distinct migratory and non-migratory ecotypes of an endemic New Zealand eleotrid (Gobiomorphus cotidianus) - implications for incipient speciation in island freshwater fish species

scientific article (publication date: 14 February 2008)

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish

scientific article published on 01 June 2019

Diversity in visual sensitivity across Neotropical cichlid fishes via differential expression and intraretinal variation of opsin genes

scientific article published on 9 March 2021

Diving into divergence: Differentiation in swimming performances, physiology and gene expression between locally-adapted sympatric cichlid fishes

scientific article published on 11 November 2019

Do relaxed selection and habitat temperature facilitate biased mitogenomic introgression in a narrowly endemic fish?

scientific article (publication date: 29 April 2016)

Dual control by a single gene of secondary sexual characters and mating preferences in medaka

scientific article

Dual function and associated costs of a highly exaggerated trait in a cichlid fish

scientific article published in December 2021

Duplication, duplication

scientific article published in Nature

Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers

scientific article (publication date: August 1989)

EVOLUTION: Growing Trees from Molecular Data

scientific article published in Science

Early developmental and allometric patterns in the electric yellow cichlid Labidochromis caeruleus.

scientific article published on 6 April 2018

Early stages of sympatric homoploid hybrid speciation in crater lake cichlid fishes

scientific article published on 6 October 2022

Eco-morphological differentiation in Lake Magadi tilapia, an extremophile cichlid fish living in hot, alkaline and hypersaline lakes in East Africa.

scientific article published on 7 November 2015

Ecological and Lineage-Specific Factors Drive the Molecular Evolution of Rhodopsin in Cichlid Fishes.

scientific article published on 17 July 2015

Effects of constitutive expression of somatolactin alpha on skin pigmentation in medaka

scientific article published on 22 April 2009

Eggspot number and sexual selection in the cichlid fish Astatotilapia burtoni

scientific article

Embryonic and larval development in the Midas cichlid fish species flock (Amphilophus spp.): a new evo-devo model for the investigation of adaptive novelties and species differences

scientific article

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions

scientific article published on 17 February 2022

Epigenetic modifications of the glucocorticoid receptor gene are associated with the vulnerability to psychopathology in childhood maltreatment.

scientific article published on 26 May 2015

Escalation and trophic specialization drive adaptive radiation of freshwater gastropods in ancient lakes on Sulawesi, Indonesia

scientific article published in December 2004

Evidence of Selection upon Genomic GC-Content in Bacteria ⬇️

scientific article published on September 9, 2010

Evolution and orthology of hedgehog genes ⬇️

scientific article published on December 1, 1996

Evolution of duplicated reggie genes in zebrafish and goldfish

scientific article published on 01 February 2002

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes

scientific article (publication date: 2014)

Evolution of receptors for growth hormone and somatolactin in fish and land vertebrates: lessons from the lungfish and sturgeon orthologues.

scientific article published on 5 October 2007

Evolution of the elaborate male intromittent organ of Xiphophorus fishes

scientific article (publication date: October 2016)

Evolution of the vertebrate Pax4/6 class of genes with focus on its novel member, the Pax10 gene.

scientific article

Evolution: tinkering within gene regulatory landscapes

scientific article published on 01 March 2015

Evolutionary Biology: Cichlid species flocks of the past and present

scientific article

Evolutionary Dynamics of Structural Variation at a Key Locus for Color Pattern Diversification in Cichlid Fishes

scientific article published on 01 December 2019

Evolutionary active transposable elements in the genome of the coelacanth.

scientific article published in August 2013

Evolutionary analyses of hedgehog and Hoxd-10 genes in fish species closely related to the zebrafish

scientific article published on November 1996

Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes)

scientific article published on 01 November 1996

Evolutionary divergence of 3' UTRs in cichlid fishes.

scientific article published on 5 June 2018

Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

scientific article published on 13 July 2020

Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene

scientific article (publication date: 28 May 1996)

Expression of zebrafish aldh1a3 (raldh3) and absence of aldh1a1 in teleosts

scientific article published on 5 December 2007

Extreme Evolution

scientific article published on 17 March 2015

Fgfr1 signalling in the development of a sexually selected trait in vertebrates, the sword of swordtail fish

scientific article

First feeding success with two types of prey by the Central American cichlid fish, Cichlasoma managuense (Pisces, Cichlidae): morphology versus behavior

Formation of oral and pharyngeal dentition in teleosts depends on differential recruitment of retinoic acid signaling

scientific article

Fragile DNA contributes to repeated evolution

scientific article published on 21 February 2019

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

scientific article

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

scientific article published on 27 May 2020

Functional conservation and divergence of color‐pattern‐related agouti family genes in teleost fishes

scientific article published on 23 March 2021

Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction

scientific article published on January 2007

Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

scientific article

Gene(s) and individual feeding behavior: Exploring eco-evolutionary dynamics underlying left-right asymmetry in the scale-eating cichlid fish Perissodus microlepis.

scientific article published on 8 May 2018

Genetic admixture of burbot (Teleostei: Lota lota) in Lake Constance from two European glacial refugia.

scientific article

Genetic and environmental effects on the morphological asymmetry in the scale-eating cichlid fish, Perissodus microlepis

scientific article

Genetic assimilation and the evolution of direction of genital asymmetry in anablepid fishes

scientific article published on 11 May 2022

Genetic dissection of adaptive form and function in rapidly speciating cichlid fishes.

scientific article published on 17 February 2017

Genetic evidence for panmixia in a colony-breeding crater lake cichlid fish.

scientific article published on 18 January 2018

Genetic evidence for prevalence of alloparental care in a socially monogamous biparental cichlid fish, Perissodus microlepis, from Lake Tanganyika supports the "selfish shepherd effect" hypothesis.

scientific article published on 21 March 2016

Genetic identification of units for conservation in tomato frogs, genus Dyscophus

Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish

scientific article

Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping

article

Genetic signatures in an invasive parasite of Anguilla anguilla correlate with differential stock management

scientific article published in July 2010

Genetic structure and gene flow in an endangered native tilapia fish (Oreochromis esculentus) compared to invasive Nile tilapia (Oreochromis niloticus) in Yala swamp, East Africa

article

Genetic structure of the vairone Telestes souffia in the eastern part of Lake Constance, central Europe

article

Genetic support for random mating between left and right-mouth morphs in the dimorphic scale-eating cichlid fish Perissodus microlepis from Lake Tanganyika.

scientific article published in May 2010

Genetic variation of an endangered Malagasy frog, Mantella cowani, and its phylogeographic relationship to the widespread M. baroni

Genetic, comparative genomic, and expression analyses of the Mc1r locus in the polychromatic Midas cichlid fish (Teleostei, Cichlidae Amphilophus sp.) species group

scientific article published on 07 May 2010

Genome Compositional Organization in Gars Shows More Similarities to Mammals than to Other Ray-Finned Fish

scientific article

Genome Duplications and Accelerated Evolution ofHoxGenes and Cluster Architecture in Teleost Fishes1

article

Genome desertification in eutherians: can gene deserts explain the uneven distribution of genes in placental mammalian genomes?

scientific article published on July 2009

Genome duplication, a trait shared by 22000 species of ray-finned fish

scientific article

Genome of the Malawi golden cichlid fish (Melanochromis auratus) reveals exon loss of oca2 in an amelanistic morph

scientific article published on 12 June 2019

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution

scientific article published on 17 February 2021

Genomic analysis of cichlid fish 'natural mutants'.

scientific article

Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes

scientific article published on 16 December 2013

Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross.

scientific article published on 14 January 2016

Genomic signatures of divergent selection and speciation patterns in a 'natural experiment', the young parallel radiations of Nicaraguan crater lake cichlid fishes

scientific article published on 30 August 2012

Genomics of Adaptation to Multiple Concurrent Stresses: Insights from Comparative Transcriptomics of a Cichlid Fish from One of Earth's Most Extreme Environments, the Hypersaline Soda Lake Magadi in Kenya, East Africa.

scientific article published on 07 September 2015

Genomics of adaptation and speciation in cichlid fishes: recent advances and analyses in African and Neotropical lineages

scientific article

Geometric morphometric analyses provide evidence for the adaptive character of the Tanganyikan cichlid fish radiations

scientific article

Giant lungfish genome elucidates the conquest of land by vertebrates

Habitat light sets the boundaries for the rapid evolution of cichlid fish vision, while sexual selection can tune it within those limits

scientific article published on 25 March 2020

Handed foraging behavior in scale-eating cichlid fish: its potential role in shaping morphological asymmetry

scientific article published in 2012

Heritability and adaptive significance of the number of egg-dummies in the cichlid fish Astatotilapia burtoni

article by Topi K. Lehtonen & Axel Meyer published 7 August 2011 in Proceedings of the Royal Society B

Heterochronic opsin expression due to early light deprivation results in drastically shifted visual sensitivity in a cichlid fish: Possible role of thyroid hormone signaling

scientific article published on 14 June 2018

Heterogeneity across Neotropical aquatic environments affects prokaryotic and eukaryotic biodiversity based on environmental DNA

scientific article published on 24 November 2021

High mitochondrial diversity within and among populations of Malagasy poison frogs

scientific article

Hindbrain patterning revisited: timing and effects of retinoic acid signalling.

scientific article

Homology and developmental genes.

scientific article published in November 1997

Homology evolving

scientific article published in 2001

Horizontal transfers of Tc1 elements between teleost fishes and their vertebrate parasites, lampreys.

scientific article

How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations.

scientific article

Hox clusters as models for vertebrate genome evolution

scientific article

Hox gene variation and evolution

scientific article published in Nature

Human integrin alphavbeta5: homology modeling and ligand binding

scientific article

Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae) driven by sexual selection

scientific article published in March 2006

Identification and characterization of gene expression involved in the coloration of cichlid fish using microarray and qRT-PCR approaches

scientific article

Identification of novel genes involved in the development of the sword and gonopodium in swordtail fish

scientific article

Implementing Large Genomic SNP Datasets in Phylogenetic Network Reconstructions: A Case Study of Particularly Rapid Radiations of Cichlid Fish

scientific article published on 03 February 2020

Incipient speciation driven by hypertrophied lips in Midas cichlid fishes?

scientific article

Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?

scientific article

Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages

scientific article

Independent fusions and recent origins of sex chromosomes in the evolution and diversification of glass knife fishes (Eigenmannia)

scientific article

Induction and prepatterning of the zebrafish pectoral fin bud requires axial retinoic acid signaling

scientific article published on 14 June 2006

Initial diversification of living amphibians predated the breakup of Pangaea

scientific article (publication date: May 2005)

Intrastrand triplex DNA repeats in bacteria: a source of genomic instability.

scientific article

Introduced predator elicits deficient brood defence behaviour in a crater lake fish ⬇️

scientific article

Introgressive hybridization and latitudinal admixture clines in North Atlantic eels.

scientific article

Isolation and characterization of 12 dinucleotide microsatellites in the European eel, Anguilla anguilla L., and tests of amplification in other species of eels

scientific article

Isolation and characterization of short tandem repeats in an invasive swimbladder nematode, parasitic in Atlantic freshwater eels, Anguillicola crassus

scientific article published in 2007

Lateralized Feeding Behavior is Associated with Asymmetrical Neuroanatomy and Lateralized Gene Expressions in the Brain in Scale-Eating Cichlid Fish

scientific article published on 24 October 2017

Lessons Learnt, Open Research Questions and Recommendations

scientific article published in 2016

Lessons from a natural experiment: Allopatric morphological divergence and sympatric diversification in the Midas cichlid species complex are largely influenced by ecology in a deterministic way

scientific article published on 27 June 2018

Ligand binding analysis for human alpha5beta1 integrin: strategies for designing new alpha5beta1 integrin antagonists

scientific article published in June 2005

Limitations of Metazoan 18S rRNA Sequence Data: Implications for Reconstructing a Phylogeny of the Animal Kingdom and Inferring the Reality of the Cambrian Explosion ⬇️

scientific article published on October 1, 1998

Lissamphibian limbs and the origins of tetrapod hox domains

scientific article published on 22 August 2019

Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes

scientific article

Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish

scientific article published in Nature Communications

Low Genetic Variability in the Hawaiian Monk Seal. Baja Variabilidad Genetica en la Foca Hawaiana

article

MacVector: Sequence Analysis Software. Version 4.1.AssemblyLIGN: Sequence Assembly Software

scholarly article by Axel Meyer published March 1995 in The Quarterly Review of Biology

Magic bullets and golden rules: data sampling in molecular phylogenetics

scientific article

Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

scientific article (publication date: 10 February 2004)

Male pregnancy in seahorses and pipefishes (family Syngnathidae): rapid diversification of paternal brood pouch morphology inferred from a molecular phylogeny

scientific article

Many genes in fish have species-specific asymmetric rates of molecular evolution

scientific article published on 8 February 2006

Mapping active promoters by ChIP-seq profiling of H3K4me3 in cichlid fish - a first step to uncover cis-regulatory elements in ecological model teleosts.

scientific article

Marine incursion: the freshwater herring of Lake Tanganyika are the product of a marine invasion into west Africa ⬇️

scientific article

MicroRNA gene regulation in extremely young and parallel adaptive radiations of crater lake cichlid fish

scientific article published on 09 August 2019

Microsatellite Analysis of Population Structure in the Endangered Hawaiian Monk Seal

article

Microsatellites in the genus Xiphophorus, developed in Xiphophorus montezumae

article published in 2002

Mitochondrial DNA phylogeny of the family Cichlidae: monophyly and fast molecular evolution of the neotropical assemblage.

scientific article published on June 1999

Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida)

scholarly article by E. Braga et al published 28 January 1999 in Marine Biology

Mitochondrial evidence for distinct phylogeographic units in the endangered Malagasy poison frog Mantella bernhardi

scientific article published in May 2006

Mitochondrial phylogeny and phylogeography of East African squeaker catfishes (Siluriformes: Synodontis)

scientific article

Mitochondrial phylogeny of trematomid fishes (Nototheniidae, Perciformes) and the evolution of Antarctic fish.

scientific article published on April 1996

Molecular Evolution of the Neural Crest Regulatory Network in Ray-Finned Fish.

scientific article

Molecular Phylogenetic Information on the Identity of the Closest Living Relative(s) of Land Vertebrates ⬇️

scientific article published on 01 September 1997

Molecular and morphological convergence to sulfide-tolerant fishes in a new species of Jenynsia (Cyprinodontiformes: Anablepidae), the first extremophile member of the family

scientific article published on 10 July 2019

Molecular investigation of genetic assimilation during the rapid adaptive radiations of East African cichlid fishes

scientific article

Molecular investigation of mechanical strain-induced phenotypic plasticity in the ecologically important pharyngeal jaws of cichlid fish

scientific article published on 25 July 2014

Molecular parallelism in the evolution of a master sex‐determining role for the anti‐Mullerian hormone receptor 2 gene ( amhr2 ) in Midas cichlids

scientific article published on 26 April 2022

Molecular phylogenetic evidence for paraphyly of the genus Sooglossus, with the description of a new genus of Seychellean frogs

article

Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey

scientific article published in October 2002

Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences

scientific article published on 01 July 2000

Molecular phylogeny of Malagasy reed frogs, Heterixalus, and the relative performance of bioacoustics and color-patterns for resolving their systematics

scientific article published on 18 July 2007

Molecular systematics of mantelline frogs from Madagascar and the evolution of their femoral glands

article

Morphological and genetic correlates in the left–right asymmetric scale-eating cichlid fish of Lake Tanganyika

scientific article published on 23 March 2018

Morphometrics and allometry in the trophically polymorphic cichlid fish,Cichlasoma citrinellum: Alternative adaptations and ontogenetic changes in shape

scholarly article by Axel Meyer published June 1990 in Journal of Zoology

Mouth asymmetry in the textbook example of scale-eating cichlid fish is not a discrete dimorphism after all.

scientific article published on 10 October 2012

Multi-gene phylogeny of Madagascar's plated lizards, Zonosaurus and Tracheloptychus (Squamata: Gerrhosauridae).

scientific article

Multiple origin of viviparity in Southeast Asian gastropods (Cerithioidea: Pachychilidae) and its evolutionary implications

scientific article

Multiple overseas dispersal in amphibians

scientific article (publication date: 7 December 2003)

Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids

scientific article

Natural colonization or introduction? Phylogeographical relationships and morphological differentiation of house geckos (Hemidactylus) from Madagascar

article

Natural hybridization in primates: one evolutionary mechanism

scientific article published on 30 August 2006

Neural innervation as a potential trigger of morphological color change and sexual dimorphism in cichlid fish

scientific article published on 23 July 2020

Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark.

scholarly article

Novel evolutionary relationship among four fish model systems.

scientific article published in September 2004

Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs

scientific article published on 11 May 2006

Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins

scientific article

Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates

scientific article (publication date: 6 April 2004)

Of bars and stripes: A Malawi cichlid hybrid cross provides insights into genetic modularity and evolution of modifier loci underlying colour pattern diversification

scientific article published in 2021

Old fish in a young lake: stone loach (Pisces: Barbatula barbatula) populations in Lake Constance are genetically isolated by distance

scientific article published on 01 April 2005

On the Importance of Being Ernst Mayr

scientific article

On the Nature of Scientific Progress: Anarchistic Theory Says “Anything Goes”—But I Don't Think So.

scientific article

On the origin of and phylogenetic relationships among living amphibians

scientific article (publication date: 19 June 2001)

One cost of being gold: selective predation and implications for the maintenance of the Midas cichlid colour polymorphism (Perciformes: Cichlidae)

article

Optimized and affordable high-throughput sequencing workflow for preserved and non-preserved small zooplankton specimens

scientific article published on 17 July 2020

Origin of tetrapods inferred from their mitochondrial DNA affiliation to lungfish

scientific article published in November 1990

Origin of the antitropical distribution pattern in marine mussels ( Mytilus spp.): routes and timing of transequatorial migration

scientific article published in 2000

Origin of the superflock of cichlid fishes from Lake Victoria, East Africa

scientific article

Origin, spread and demography of the Mycobacterium tuberculosis complex

scientific article published in 2008

Our inheritance She Has Her Mother's Laugh: The Powers, Perversions, and Potential of Heredity Carl Zimmer Dutton, 2018. 672 pp

scientific article published on 25 May 2018

Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes

scientific article

PCR survey of hox genes in the goldfish Carassius auratus auratus

scientific article published in May 2007

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

scientific article published on 29 October 2020

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

scientific article published on 10 July 2020

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

scientific article published on 18 June 2020

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

scientific article published on 6 April 2020

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

scientific article published on 7 October 2019

Parallel evolution in Ugandan crater lakes: repeated evolution of limnetic body shapes in haplochromine cichlid fish.

scientific article

Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes.

scientific article

Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua

scientific article published on 12 October 2012

Phylogenetic analyses suggest lateral gene transfer from the mitochondrion to the apicoplast

article

Phylogenetic relationships and evolutionary processes in East African cichlid fishes

article

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish

scientific article published on 01 August 2004

Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes

scientific article published on 01 April 2022

Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact?

scientific article

Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit.

scientific article

Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements

scientific article

Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?

article

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

scientific article published in Nature Communications

Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes

scientific article

Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas

scientific article

Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe

scientific article published in September 2003

Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes

scientific article

Phylotranscriptomic consolidation of the jawed vertebrate timetree.

scientific article

Plate tectonics and biogeographical patterns of the Pseudophoxinus (Pisces: Cypriniformes) species complex of central Anatolia, Turkey

scientific article published in July 2004

Platyrrhine systematics: a simultaneous analysis of molecular and morphological data

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Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids

scientific article published on 01 February 2019

Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes

scholarly article

Polymorphic DNA microsatellites identified in the yellow dung fly (Scathophaga stercoraria).

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Population genetic analysis of Arapaima gigas, one of the largest freshwater fishes of the Amazon basin: implications for its conservation

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Population genetic structure of North American burbot (Lota lota maculosa) across the Nearctic and at its contact zone with Eurasian burbot (Lota lota lota)

Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression

scientific article

Population structure of the parasitic nematode Anguillicola crassus, an invader of declining North Atlantic eel stocks

scientific article

Population-structure and genetic diversity in a haplochromine cichlid fish [corrected] of a satellite lake of Lake Victoria

scientific article published in September 2004

Positive Darwinian selection drives the evolution of the morphology-related gene, EPCAM, in particularly species-rich lineages of African cichlid fishes

scientific article published on 03 August 2011

Positive selection and gene conversion in SPP120, a fertilization-related gene, during the East African cichlid fish radiation

scientific article

Post-mating clutch piracy in an amphibian

scientific article published in September 2004

Pronounced genetic differentiation of small, isolated and fragmented tilapia populations inhabiting the Magadi Soda Lake in Kenya

article

Rapid adaptation to a novel light environment: The importance of ontogeny and phenotypic plasticity in shaping the visual system of Nicaraguan Midas cichlid fish (Amphilophus citrinellus spp.).

scientific article

Rapid and parallel adaptive evolution of the visual system of Neotropical Midas cichlid fishes.

scientific article published on 21 April 2017

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

scientific article

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

scientific article

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

article

Recent Advances in the (Molecular) Phylogeny of Vertebrates

scholarly article by Axel Meyer & Rafael Zardoya published November 2003 in Annual Review of Ecology, Evolution, and Systematics

Reconstructing the evolutionary history of chromosomal races on islands: a genome-wide analysis of natural house mouse populations

scientific article published on 25 May 2020

Recurrent ecological adaptations revealed through a molecular analysis of the secretive cophyline frogs of Madagascar

scientific article (publication date: February 2005)

Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish.

scientific article

Repeating patterns of mimicry

scientific article published in October 2006

Resampling-Based Approaches to Study Variation in Morphological Modularity ⬇️

scientific article published on July 16, 2013

Rescue from oculocutaneous albinism type 4 using medaka slc45a2 cDNA driven by its own promoter

scientific article published on February 2008

Rethink the Nicaragua Canal

scientific article published on 01 January 2015

Retinoic acid is involved in the metamorphosis of the anal fin into an intromittent organ, the gonopodium, in the green swordtail (Xiphophorus hellerii).

scientific article

Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups

scientific article published on 23 December 2006

Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes

scientific article (publication date: 2013)

Reversed evolution of grazer resistance to cyanobacteria

scientific article

Reverting ontogeny: rapid phenotypic plasticity of colour vision in cichlid fish

scientific article published on 31 July 2019

Revised phylogeny of whales suggested by mitochondrial ribosomal DNA sequences

scientific article published in Nature

Revisiting de Beer's textbook example of heterochrony and jaw elongation in fish: calmodulin expression reflects heterochronic growth, and underlies morphological innovation in the jaws of belonoid fishes

scientific article published on 5 February 2014

Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

scientific article published in December 2001

Revisiting the origin of the vertebrate Hox14 by including its relict sarcopterygian members

scientific article

Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin

scientific article (publication date: 2013)

Sampling genetic diversity in the sympatrically and allopatrically speciating Midas cichlid species complex over a 16 year time series

scientific article

Sarcopterygian fin ontogeny elucidates the origin of hands with digits ⬇️

journalArticle

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

scientific article

Sexual dimorphism in a trophically polymorphic cichlid fish?

scientific article published on 20 August 2015

Shape analysis of symmetric structures: quantifying variation among individuals and asymmetry

scientific article published on 01 October 2002

Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish

scientific article

Shortcomings of the cytochrome b gene as a molecular marker ⬇️

scientific article published on 01 August 1994

Similar levels of diversity and population Structure in superflock and non-superflock cichlid fishes from Lake Victoria, Africa

scientific article published on 30 November 2011

Space, sympatry and speciation

scientific article

Species divergence and seasonal succession in rates of mate desertion in closely related Neotropical cichlid fishes

article

Species-specific differences in adaptive phenotypic plasticity in an ecologically relevant trophic trait: hypertrophic lips in Midas cichlid fishes

scientific article published on 18 February 2014

Spiny and soft-rayed fin domains in acanthomorph fish are established through a BMP-- signaling network

scientific article published on 20 July 2021

Strong Reproductive Skew Among Males in the Multiply Mated Swordtail Xiphophorus multilineatus (Teleostei)

Success of cuckoo catfish brood parasitism reflects coevolutionary history and individual experience of their cichlid hosts.

scientific article

Sympatric Speciation

scientific article published on 26 August 2014

Sympatric ecological divergence associated with a color polymorphism.

scientific article published on 5 October 2015

Sympatric speciation in Nicaraguan crater lake cichlid fish

scientific article

Sympatric speciation without borders?

scientific article published in May 2010

Systematics of New World monkeys (Platyrrhini, Primates) based on 16S mitochondrial DNA sequences: a comparative analysis of different weighting methods in cladistic analysis.

scientific article published in December 1995

TaxI: a software tool for DNA barcoding using distance methods

scientific article published in October 2005

Tempo and mode of recurrent polyploidization in the Carassius auratus species complex (Cypriniformes, Cyprinidae)

scientific article

Territorial aggression can be sensitive to the status of heterospecific intruders

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The Comparative Genomic Landscape of Adaptive Radiation in Crater Lake Cichlid Fishes

scientific article published on 11 December 2020

The Identification of the Closest Living Relative(s) of Tetrapods: Phylogenomic Lessons for Resolving Short Ancient Internodes

scientific article published on 17 July 2016

The Integrated Genomic Architecture and Evolution of Dental Divergence in East African Cichlid Fishes (Haplochromis chilotes x H. nyererei).

scientific article published on 27 July 2017

The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?

scientific article published on 01 July 2004

The Piranha Genome Provides Molecular Insight Associated to Its Unique Feeding Behavior

scientific article published on 01 August 2019

The Radiation of Characiform Fishes and the Limits of Resolution of Mitochondrial Ribosomal DNA Sequences

scientific article published in 1997

The Role of microRNAs in the Repeated Parallel Diversification of Lineages of Midas Cichlid Fish from Nicaragua

scientific article

The coelacanth and its genome.

scientific article

The direction of genital asymmetry is expressed stochastically in internally fertilizing anablepid fishes

scientific article published on 08 July 2020

The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication

scientific article published on January 2009

The evolution of copulatory organs, internal fertilization, placentae and viviparity in killifishes (Cyprinodontiformes) inferred from a DNA phylogeny of the tyrosine kinase gene X-src

scientific article published on 01 November 1993

The evolution of sexually selected traits in male swordtail fishes (Xiphophorus: Poeciliidae)

The evolutionary genomics of cichlid fishes: explosive speciation and adaptation in the postgenomic era.

scientific article published on 29 May 2014

The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

scientific article published on 02 April 2013

The evolutionary position of turtles revised

scientific article published on 01 May 2001

The genome of the arapaima (Arapaima gigas) provides insights into gigantism, fast growth and chromosomal sex determination system

scientific article published on 28 March 2019

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

scientific article published in October 2001

The gut microbial community of Midas cichlid fish in repeatedly evolved limnetic-benthic species pairs

scientific article

The imperiled fish fauna in the Nicaragua Canal zone ⬇️

scientific article (publication date: February 2017)

The imprinted NPAP1 gene in the Prader-Willi syndrome region belongs to a POM121-related family of retrogenes

scientific article published on February 2014

The mole genome reveals regulatory rearrangements associated with adaptive intersexuality

scientific article

The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes

scientific article

The phantoms of a high-seven - or - why do our thumbs stick out?

scientific article

The phylogenetic position of the zebrafish (Danio rerio), a model system in developmental biology: an invitation to the comparative method

scientific article published in June 1993

The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes

scientific article published in 2022

The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis

scientific article published on 25 September 2007

The role of rare morph advantage and conspicuousness in the stable gold-dark colour polymorphism of a crater lake Midas cichlid fish.

scientific article

The seahorse genome and the evolution of its specialized morphology.

scientific article published on December 2016

The skeletal ontogeny of Astatotilapia burtoni - a direct-developing model system for the evolution and development of the teleost body plan.

scientific article

The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics

scientific article published on 20 April 2004

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

scientific article

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

scientific article published on 30 March 2020

The stuff new species are made of?

Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates

scientific article published on 6 June 2006

Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?

scientific article

Tol2 transposon-mediated transgenesis in the Midas cichlid (Amphilophus citrinellus) - towards understanding gene function and regulatory evolution in an ecological model system for rapid phenotypic diversification.

scientific article

Total evidence: Molecules, morphology, and the phylogenetics of cichlid fishes

scientific article published on 01 April 2000

Towards understanding the genetic basis of mouth asymmetry in the scale-eating cichlid Perissodus microlepis

scientific article

Trade-offs in cavefish sensory capacity ⬇️

scientific article published on January 24, 2013

Trans-species polymorphism of class II Mhc loci in danio fishes

scientific article

Transcriptomics of morphological color change in polychromatic Midas cichlids ⬇️

scientific article published on March 13, 2013

Transcriptomics of two evolutionary novelties: how to make a sperm-transfer organ out of an anal fin and a sexually selected "sword" out of a caudal fin.

scientific article

Transgenerational impact of intimate partner violence on methylation in the promoter of the glucocorticoid receptor

scientific article

Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case

scientific article

Unusual mitochondrial DNA polymorphism in two local populations of blue tit Parus caeruleus

scientific article published on May 1, 1992

Using gene-history and expression analyses to assess the involvement of LGI genes in human disorders

scientific article

Vegetation changes over the last centuries in the Lower Lake Constance region reconstructed from sediment‐core environmental DNA

scientific article published on 23 March 2022

Vertebrate genomics: More fishy tales about Hox genes.

scientific article

Wanda: a database of duplicated fish genes

scientific article

We are devo-evo. Workshop: Novartis Foundation Symposium No. 222: Homology, London, UK, 21-23 July 1998. Followed by an open meeting: Homology, Welcome Trust, London, UK, 24 July 1998.

scientific article

What big lips are good for: on the adaptive function of repeatedly evolved hypertrophied lips of cichlid fishes

article published in 2015

quaddRAD: a new high-multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage.

scientific article

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