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List of works by Hari D Upadhyaya

A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in Chickpea

scientific article

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea.

scientific article published on 11 July 2017

A SSR kit to study genetic diversity in chickpea (Cicer arietinum L.)

scientific article published in July 2014

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea

scientific article

A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea.

scientific article published on 22 September 2015

A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea

scientific article published on 10 June 2015

A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction

scientific article published on 25 March 2020

ABC Transporter-Mediated Transport of Glutathione Conjugates Enhances Seed Yield and Quality in Chickpea

scientific article published on 08 February 2019

Advances in Arachis genomics for peanut improvement

scientific article published on 9 November 2011

Advances in Host Plant and Rhizobium Genomics to Enhance Symbiotic Nitrogen Fixation in Grain Legumes

article

Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies

scientific article published in November 2012

Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers

scientific article published on 5 June 2014

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).

scientific article published on 29 March 2011

Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.

scientific article published on 24 November 2015

Association mapping of height and maturity across five environments using the sorghum mini core collection ⬇️

scientific article published on June 8, 2012

Association mapping of maturity and plant height using SNP markers with the sorghum mini core collection ⬇️

scientific article published on May 7, 2013

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea

scientific article published on 30 March 2019

Correction to: Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.)

scientific article published in June 2018

Correction: Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

scientific article published on 6 April 2017

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

scientific article published on 27 April 2015

Developing a Mini Core of Peanut for Utilization of Genetic Resources

scientific article published in 2002

Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

scientific article published on 16 January 2017

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.).

scientific article

Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.)

scientific article published in April 2014

Diversifying Food Systems in the Pursuit of Sustainable Food Production and Healthy Diets

scientific article

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

scientific article published on 31 May 2016

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

scientific article published on 27 January 2013

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

scientific article

EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea

scientific article published on 19 April 2016

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.

scientific article

Enhancing Crop Gene Pools with Beneficial Traits Using Wild Relatives

article

Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

scholarly article published in Nature Biotechnology

Exploiting Genomic Resources for Efficient Conservation and Use of Chickpea, Groundnut, and Pigeonpea Collections for Crop Improvement

scientific article published in 2013

Exploiting Phenylpropanoid Derivatives to Enhance the Nutraceutical Values of Cereals and Legumes

scientific article

Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers

scientific article

Exploring the genetic variability and diversity of pearl millet core collection germplasm for grain nutritional traits improvement

scientific article published on 03 December 2020

Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping ⬇️

scientific article published on April 29, 2013

Genetic Variation and Postflowering Drought Effects on Seed Iron and Zinc in ICRISAT Sorghum Mini Core Collection

scientific article published in 2016

Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches

scientific article published on 6 May 2014

Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.

scientific article published on 20 April 2018

Genetic dissection of plant growth habit in chickpea.

scientific article published on 9 June 2017

Genetic dissection of seed-iron and zinc concentrations in chickpea

scientific article published on 11 April 2016

Genetic diversity and demographic history of Cajanus spp. illustrated from genome-wide SNPs

scientific article

Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives.

scientific article published on 22 June 2012

Genetic relationships among seven sections of genus Arachis studied by using SSR markers

scientific article

Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor

scientific article

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.).

scientific article

Genome-Wide Population Structure Analyses of Three Minor Millets: Kodo Millet, Little Millet, and Proso Millet

scientific article published on 01 November 2019

Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea

scientific article published on 23 March 2016

Genome-environment associations in sorghum landraces predict adaptive traits

scientific article

Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea

scientific article published on 08 June 2019

Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea.

scientific article

Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea.

scientific article

Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea

scientific article published in Scientific Reports

Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.

scientific article

Genomewide association studies for 50 agronomic traits in peanut using the 'reference set' comprising 300 genotypes from 48 countries of the semi-arid tropics of the world

scientific article published on 20 August 2014

Genomic tools and germplasm diversity for chickpea improvement

scientific article published on 14 January 2011

Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea

scientific article published in 2017

Haploids: Constraints and opportunities in plant breeding

scientific article published on 09 July 2015

Harnessing Genetic Diversity of Wild Species for Genetic Enhancement of Cultivated Peanut

scientific article published in 2017

Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea)

scientific article published on 10 November 2011

Hypothesis on the Influence of the Magnetic Behaviour of Hydrogen Doped Zinc Oxide during Its Plasma Sputtering Process

scientific article published on 14 February 2021

Identification and Evaluation of Chickpea Germplasm for Tolerance to Heat Stress

scientific article published in 2011

Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea

scientific article

Identification of candidate genes for dissecting complex branch number trait in chickpea.

scientific article

Identification of genetic markers linked to anthracnose resistance in sorghum using association analysis ⬇️

scientific article published on March 6, 2013

Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.)

scientific article published on 15 December 2017

Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis.

scientific article

Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species

scientific article published in November 2009

Landrace Germplasm for Improving Yield and Abiotic Stress Adaptation

scientific article

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

scientific article

Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes

scientific article published on 26 October 2012

Latitudinal Adaptation of Flowering Response to Photoperiod and Temperature in the World Collection of Sorghum Landraces

scholarly article published in May 2018

List of contributors

Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources.

scientific article

Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics

article

Multi-Trait Diverse Germplasm Sources from Mini Core Collection for Sorghum Improvement

scientific article published in 2019

Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)

scientific article published in 2011

Optical Analysis of RF Sputtering Plasma through Colour Characterization

scholarly article

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

scientific article

Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions

scientific article published on 03 June 2020

Phylogenetic diversity of Mesorhizobium in chickpea

scientific article published on June 2014

Pigeonpea improvement: An amalgam of breeding and genomic research

scholarly article

Population Genetics and Structure of a Global Foxtail Millet Germplasm Collection

scientific article published on 01 November 2015

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

scientific article

Post‐Flowering Drought Tolerance Using Managed Stress Trials, Adjustment to Flowering, and Mini Core Collection in Sorghum

scientific article published in 2017

Progress in the utilization ofCajanus platycarpus(Benth.) Maesen in pigeonpea improvement

scientific article published on 31 May 2011

Publisher Correction: Exploring the genetic variability and diversity of pearl millet core collection germplasm for grain nutritional traits improvement

correction of a scholarly article

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.).

scientific article published on February 2017

SNP markers linked to leaf rust and grain mold resistance in sorghum

scientific article published in 2013

Sexual and apomictic plant reproduction in the genomics era: exploring the mechanisms potentially useful in crop plants

scientific article published on 28 May 2010

Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform

scientific article published in 2013

Single Nucleotide Polymorphism–based Genetic Diversity in the Reference Set of Peanut ( spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays

scientific article published in 2013

Superior haplotypes for haplotype-based breeding for drought tolerance in pigeonpea (Cajanus cajan L.).

scientific article published on 26 May 2020

The DNA Replication, Repair, and Recombination Pathway Genes Modulating Yield and Stress Tolerance Traits in Chickpea

scientific article published in 2021

The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses

scientific article published on 22 June 2016

The Genetic Makeup of a Global Barnyard Millet Germplasm Collection

scientific article published on 01 March 2015

The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers

scientific article published in April 2011

Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural traits enhance yield and productivity in chickpea

scientific article published on 19 March 2019

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.

scientific article published on 5 May 2015

Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm

scientific article published in 2013

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits

scientific article published on 22 May 2017

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